Ten quick tips for deep learning in biology

• Benjamin D. Lee ,

  * E-mail: benjamindlee@me.com

  Affiliations In-Q-Tel Labs, Arlington, Virginia, United States of America, School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts, United States of America, Department of Genetics, Harvard Medical School, Boston, Massachusetts, United States of America

  https://orcid.org/0000-0002-7133-8397

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• Anthony Gitter,

  Affiliations Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America, Morgridge Institute for Research, Madison, Wisconsin, United States of America

  https://orcid.org/0000-0002-5324-9833

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• Casey S. Greene,

  Affiliations Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America, Department of Biochemistry and Molecular Genetics, University of Colorado School of Medicine, Aurora, Colorado, United States of America, Center for Health AI, University of Colorado School of Medicine, Aurora, Colorado, United States of America

  https://orcid.org/0000-0001-8713-9213

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• Sebastian Raschka,

  Affiliation Department of Statistics, University of Wisconsin-Madison, Madison, Wisconsin, United States of America

  https://orcid.org/0000-0001-6989-4493

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• Finlay Maguire,

  Affiliation Faculty of Computer Science, Dalhousie University, Halifax, Nova Scotia, Canada

  https://orcid.org/0000-0002-1203-9514

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• Alexander J. Titus,

  Affiliations University of New Hampshire, Manchester, New Hampshire, United States of America, Bioeconomy.XYZ, Manchester, New Hampshire, United States of America

  https://orcid.org/0000-0002-0145-9564

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• Michael D. Kessler,

  Affiliations Department of Oncology, Johns Hopkins University, Baltimore, Maryland, United States of America, Institute for Genome Sciences, University of Maryland School of Medicine, Baltimore, Maryland, United States of America

  https://orcid.org/0000-0003-1258-5221

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• Alexandra J. Lee,

  Affiliations Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America, Genomics and Computational Biology Graduate Program, University of Pennsylvania, Philadelphia, Pennsylvania, United States of America

  https://orcid.org/0000-0002-0208-3730

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• Marc G. Chevrette,

  Affiliation Wisconsin Institute for Discovery and Department of Plant Pathology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America

  https://orcid.org/0000-0002-7209-0717

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• Paul Allen Stewart,

  Affiliation Department of Biostatistics and Bioinformatics, Moffitt Cancer Center, Tampa, Florida, United States of America

  https://orcid.org/0000-0003-0882-308X

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• Thiago Britto-Borges,

  Affiliations Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, University Hospital Heidelberg, Heidelberg, Germany, Department of Internal Medicine III (Cardiology, Angiology, and Pneumology), University Hospital Heidelberg, Heidelberg, Germany

  https://orcid.org/0000-0002-6218-4429

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• Evan M. Cofer,

  Affiliations Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, United States of America, Graduate Program in Quantitative and Computational Biology, Princeton University, Princeton, New Jersey, United States of America

  https://orcid.org/0000-0003-3877-0433

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• Kun-Hsing Yu,

  Affiliations Department of Biomedical Informatics, Harvard Medical School, Boston, Massachusetts, United States of America, Department of Pathology, Brigham and Women’s Hospital, Boston, Massachusetts, United States of America

  https://orcid.org/0000-0001-9892-8218

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• Juan Jose Carmona,

  Affiliation Philips Healthcare, Cambridge, Massachusetts, United States of America

  https://orcid.org/0000-0002-3029-4658

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• Elana J. Fertig,

  Affiliations Department of Oncology, Johns Hopkins University, Baltimore, Maryland, United States of America, Department of Biomedical Engineering, Department of Applied Mathematics and Statistics, Convergence Institute, Johns Hopkins University, Baltimore, Maryland, United States of America

  https://orcid.org/0000-0003-3204-342X

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• Alexandr A. Kalinin,

  Affiliations Medical Big Data Group, Shenzhen Research Institute of Big Data, Shenzhen, China, Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, Michigan, United States of America

  https://orcid.org/0000-0003-4563-3226

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• Brandon Signal,

  Affiliation School of Medicine, College of Health and Medicine, University of Tasmania, Hobart, Australia

  https://orcid.org/0000-0002-6839-2392

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• Benjamin J. Lengerich,

  Affiliation Computer Science Department, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

  https://orcid.org/0000-0001-8690-9554

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• Timothy J. Triche Jr.,

  Affiliations Center for Epigenetics, Van Andel Research Institute, Grand Rapids, Michigan, United States of America, Department of Pediatrics, College of Human Medicine, Michigan State University, East Lansing, Michigan, United States of America, Department of Translational Genomics, Keck School of Medicine, University of Southern California, Los Angeles, California, United States of America

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•  [ ... ],
• Simina M. Boca

  Affiliations Innovation Center for Biomedical Informatics, Georgetown University Medical Center, District of Columbia, United States of America, Department of Oncology, Georgetown University Medical Center, Washington, DC, United States of America, Department of Biostatistics, Bioinformatics and Biomathematics, Georgetown University Medical Center, Washington, DC, United States of America, Cancer Prevention and Control Program, Lombardi Comprehensive Cancer Center, Washington, DC, United States of America

  https://orcid.org/0000-0002-1400-3398

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