CoRE-ATAC: A deep learning model for the functional classification of regulatory elements from single cell and bulk ATAC-seq data

• Asa Thibodeau,

  Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliation The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut, United States of America

  https://orcid.org/0000-0003-2421-4225

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• Shubham Khetan,

  Roles Resources, Supervision, Writing – review & editing

  Current address: Division of Genetics, Department of Medicine, Brigham and Women’s Hospital, Boston, Massachusetts, United States of America

  Affiliation The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut, United States of America

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• Alper Eroglu,

  Roles Formal analysis, Writing – review & editing

  Affiliation The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut, United States of America

  https://orcid.org/0000-0001-9473-3317

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• Ryan Tewhey,

  Roles Resources, Supervision, Writing – review & editing

  Affiliation The Jackson Laboratory, Bar Harbor, Maine, United States of America

  https://orcid.org/0000-0002-4607-8001

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• Michael L. Stitzel,

  Roles Resources, Supervision, Writing – review & editing

  Affiliations The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut, United States of America, Institute for Systems Genomics, University of Connecticut Health Center, Farmington, Connecticut, United States of America, Department of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, Connecticut, United States of America

  https://orcid.org/0000-0001-5630-559X

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• Duygu Ucar

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: duygu.ucar@jax.org

  Affiliations The Jackson Laboratory for Genomic Medicine, Farmington, Connecticut, United States of America, Institute for Systems Genomics, University of Connecticut Health Center, Farmington, Connecticut, United States of America, Department of Genetics and Genome Sciences, University of Connecticut Health Center, Farmington, Connecticut, United States of America

  https://orcid.org/0000-0002-9772-3066

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