Partitioning variability in animal behavioral videos using semi-supervised variational autoencoders

• Matthew R. Whiteway ,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Writing – original draft, Writing – review & editing

  * E-mail: m.whiteway@columbia.edu

  Affiliations Center for Theoretical Neuroscience, Columbia University, New York, New York, United States of America, Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, New York, United States of America, Grossman Center for the Statistics of Mind, Columbia University, New York, New York, United States of America, Department of Statistics, Columbia University, New York, New York, United States of America, Department of Neuroscience, Columbia University, New York, New York, United States of America

  https://orcid.org/0000-0003-3756-1349

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• Dan Biderman,

  Roles Conceptualization, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliations Center for Theoretical Neuroscience, Columbia University, New York, New York, United States of America, Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, New York, United States of America, Grossman Center for the Statistics of Mind, Columbia University, New York, New York, United States of America, Department of Statistics, Columbia University, New York, New York, United States of America, Department of Neuroscience, Columbia University, New York, New York, United States of America

  https://orcid.org/0000-0003-2054-8439

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• Yoni Friedman,

  Roles Data curation, Software

  Affiliations Center for Theoretical Neuroscience, Columbia University, New York, New York, United States of America, Department of Brain and Cognitive Sciences, Massachusetts Institute of Technology, Boston, Massachusetts, United States of America

  https://orcid.org/0000-0003-4966-6869

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• Mario Dipoppa,

  Roles Funding acquisition, Investigation, Writing – review & editing

  Affiliations Center for Theoretical Neuroscience, Columbia University, New York, New York, United States of America, Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, New York, United States of America

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• E. Kelly Buchanan,

  Roles Data curation, Methodology, Software, Writing – review & editing

  Affiliations Center for Theoretical Neuroscience, Columbia University, New York, New York, United States of America, Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, New York, United States of America, Grossman Center for the Statistics of Mind, Columbia University, New York, New York, United States of America, Department of Statistics, Columbia University, New York, New York, United States of America, Department of Neuroscience, Columbia University, New York, New York, United States of America

  https://orcid.org/0000-0003-1448-5662

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• Anqi Wu,

  Roles Data curation, Methodology, Software, Writing – review & editing

  Affiliations Center for Theoretical Neuroscience, Columbia University, New York, New York, United States of America, Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, New York, United States of America, Grossman Center for the Statistics of Mind, Columbia University, New York, New York, United States of America, Department of Statistics, Columbia University, New York, New York, United States of America, Department of Neuroscience, Columbia University, New York, New York, United States of America

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• John Zhou,

  Roles Data curation, Resources, Software

  Affiliation Department of Computer Science, Columbia University, New York, New York, United States of America

  https://orcid.org/0000-0003-3565-5376

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• Niccolò Bonacchi,

  Roles Data curation

  Affiliation Champalimaud Centre for the Unknown, Lisbon, Portugal

  https://orcid.org/0000-0001-5228-6918

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• Nathaniel J. Miska,

  Roles Investigation

  Affiliation Sainsbury-Wellcome Centre for Neural Circuits and Behavior, University College London, London, United Kingdom

  https://orcid.org/0000-0001-8587-4919

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• Jean-Paul Noel,

  Roles Investigation, Writing – review & editing

  Affiliation Center for Neural Science, New York University, New York, New York, United States of America

  https://orcid.org/0000-0001-5297-3363

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• Erica Rodriguez,

  Roles Investigation

  Affiliations Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, New York, United States of America, Department of Neuroscience, Columbia University, New York, New York, United States of America

  https://orcid.org/0000-0001-5966-714X

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• Michael Schartner,

  Roles Data curation, Formal analysis

  Affiliation Champalimaud Centre for the Unknown, Lisbon, Portugal

  https://orcid.org/0000-0002-4854-3034

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• Karolina Socha,

  Roles Investigation

  Affiliation Institute of Ophthalmology, University College London, London, United Kingdom

  https://orcid.org/0000-0002-1677-1489

  ⨯
• Anne E. Urai,

  Roles Investigation

  Affiliation Cognitive Psychology Unit, Leiden University, Leiden, The Netherlands

  https://orcid.org/0000-0001-5270-6513

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• C. Daniel Salzman,

  Roles Funding acquisition

  Affiliations Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, New York, United States of America, Department of Neuroscience, Columbia University, New York, New York, United States of America, Department of Psychiatry, Columbia University, New York, New York, United States of America, New York State Psychiatric Institute, New York, New York, United States of America, Kavli Institute for Brain Sciences, New York, New York, United States of America

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• The International Brain Laboratory,
• John P. Cunningham,

  Roles Funding acquisition, Writing – review & editing

  Affiliations Center for Theoretical Neuroscience, Columbia University, New York, New York, United States of America, Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, New York, United States of America, Grossman Center for the Statistics of Mind, Columbia University, New York, New York, United States of America, Department of Statistics, Columbia University, New York, New York, United States of America

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•  [ ... ],
• Liam Paninski

  Roles Conceptualization, Funding acquisition, Writing – original draft, Writing – review & editing

  Affiliations Center for Theoretical Neuroscience, Columbia University, New York, New York, United States of America, Mortimer B. Zuckerman Mind Brain Behavior Institute, Columbia University, New York, New York, United States of America, Grossman Center for the Statistics of Mind, Columbia University, New York, New York, United States of America, Department of Statistics, Columbia University, New York, New York, United States of America, Department of Neuroscience, Columbia University, New York, New York, United States of America

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