ChIP-GSM: Inferring active transcription factor modules to predict functional regulatory elements

• Xi Chen,

  Roles Conceptualization, Formal analysis, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliations Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University, Arlington, Virginia, United States of America, Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, New York, United States of America

  https://orcid.org/0000-0002-3782-9029

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• Andrew F. Neuwald,

  Roles Writing – review & editing

  Affiliation Institute for Genome Sciences and Department Biochemistry & Molecular Biology, University of Maryland School of Medicine, Baltimore, Maryland, United States of America

  https://orcid.org/0000-0002-0086-5755

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• Leena Hilakivi-Clarke,

  Roles Funding acquisition, Writing – review & editing

  Affiliation Hormel Institute, University of Minnesota, Minnesota, United States of America

  https://orcid.org/0000-0002-7052-6513

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• Robert Clarke,

  Roles Conceptualization, Funding acquisition

  Affiliation Hormel Institute, University of Minnesota, Minnesota, United States of America

  https://orcid.org/0000-0002-9278-0854

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• Jianhua Xuan

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: xuan@vt.edu

  Affiliation Bradley Department of Electrical and Computer Engineering, Virginia Polytechnic Institute and State University, Arlington, Virginia, United States of America

  https://orcid.org/0000-0001-7256-1374

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