Assessing the contribution of tumor mutational phenotypes to cancer progression risk

Yifeng Tao; Ashok Rajaraman; Xiaoyue Cui; Ziyi Cui; Haoran Chen; Yuanqi Zhao; Jesse Eaton; Hannah Kim; Jian Ma; Russell Schwartz

doi:10.1371/journal.pcbi.1008777

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Open Access

Peer-reviewed

Research Article

Assessing the contribution of tumor mutational phenotypes to cancer progression risk

Yifeng Tao,

Roles Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliations Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America, Joint Carnegie Mellon-University of Pittsburgh Ph.D. Program in Computational Biology, Pittsburgh, Pennsylvania, United States of America

https://orcid.org/0000-0001-5076-0081

⨯
Ashok Rajaraman,

Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation

Affiliation Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

https://orcid.org/0000-0002-7094-4045

⨯
Xiaoyue Cui,

Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliations Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America, Joint Carnegie Mellon-University of Pittsburgh Ph.D. Program in Computational Biology, Pittsburgh, Pennsylvania, United States of America

https://orcid.org/0000-0002-9838-553X

⨯
Ziyi Cui,

Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

https://orcid.org/0000-0001-9019-3405

⨯
Haoran Chen,

Roles Data curation, Investigation, Methodology, Software, Validation, Writing – original draft, Writing – review & editing

Affiliations Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America, Joint Carnegie Mellon-University of Pittsburgh Ph.D. Program in Computational Biology, Pittsburgh, Pennsylvania, United States of America

https://orcid.org/0000-0003-3830-8003

⨯
Yuanqi Zhao,

Roles Investigation, Methodology, Software, Validation, Writing – original draft, Writing – review & editing

Affiliation Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

https://orcid.org/0000-0002-1253-9316

⨯
Jesse Eaton,

Roles Data curation, Investigation, Methodology, Software, Validation, Writing – original draft, Writing – review & editing

Affiliation Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

https://orcid.org/0000-0001-7818-7774

⨯
Hannah Kim,

Roles Investigation, Methodology, Software, Validation, Writing – original draft, Writing – review & editing

Affiliation Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America
⨯
Jian Ma ,

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: jianma@cs.cmu.edu (JM); russells@andrew.cmu.edu (RS)

Affiliation Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

https://orcid.org/0000-0002-4202-5834

⨯
Russell Schwartz

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: jianma@cs.cmu.edu (JM); russells@andrew.cmu.edu (RS)

Affiliations Computational Biology Department, School of Computer Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America, Department of Biological Sciences, Mellon College of Science, Carnegie Mellon University, Pittsburgh, Pennsylvania, United States of America

https://orcid.org/0000-0002-4970-2252

⨯

Assessing the contribution of tumor mutational phenotypes to cancer progression risk

Yifeng Tao,
Ashok Rajaraman,
Xiaoyue Cui,
Ziyi Cui,
Haoran Chen,
Yuanqi Zhao,
Jesse Eaton,
Hannah Kim,
Jian Ma,
Russell Schwartz

Published: March 12, 2021
https://doi.org/10.1371/journal.pcbi.1008777

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Point mutation
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