Metagenomics workflow for hybrid assembly, differential coverage binning, metatranscriptomics and pathway analysis (MUFFIN)

• Renaud Van Damme ,

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft

  * E-mail: renaud.van.damme@slu.se

  Affiliations Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden, Department Animal Breeding and Genetics, Bioinformatics section, Swedish University of Agricultural Sciences, Uppsala, Sweden

  https://orcid.org/0000-0002-7909-4868

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• Martin Hölzer,

  Roles Methodology, Software, Writing – review & editing

  Affiliation RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University Jena, Jena, Germany

  https://orcid.org/0000-0001-7090-8717

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• Adrian Viehweger,

  Roles Methodology, Software, Writing – review & editing

  Affiliations RNA Bioinformatics and High-Throughput Analysis, Friedrich Schiller University Jena, Jena, Germany, Department of Medical Microbiology, University Hospital Leipzig, Leipzig Germany

  https://orcid.org/0000-0002-8970-5204

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• Bettina Müller,

  Roles Data curation, Resources, Validation

  Affiliation Department of Molecular Sciences, Swedish University of Agricultural Sciences, Uppsala, Sweden

  https://orcid.org/0000-0002-0030-7710

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• Erik Bongcam-Rudloff,

  Roles Resources, Software, Writing – review & editing

  Affiliation Department Animal Breeding and Genetics, Bioinformatics section, Swedish University of Agricultural Sciences, Uppsala, Sweden

  https://orcid.org/0000-0002-1947-8288

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• Christian Brandt

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Project administration, Software, Supervision, Writing – review & editing

  Affiliations Department Animal Breeding and Genetics, Bioinformatics section, Swedish University of Agricultural Sciences, Uppsala, Sweden, Institute for Infectious Diseases and Infection Control, Jena University Hospital, Jena, Germany

  https://orcid.org/0000-0002-7199-3957

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