One is not enough: On the effects of reference genome for the mapping and subsequent analyses of short-reads

• Carlos Valiente-Mullor,

  Roles Data curation, Formal analysis, Investigation, Software, Validation, Visualization, Writing – original draft

  Affiliation Joint Research Unit “Infection and Public Health” FISABIO-University of Valencia, Institute for Integrative Systems Biology (I2SysBio), Valencia, Spain

  https://orcid.org/0000-0003-4009-6759

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• Beatriz Beamud ,

  Roles Conceptualization, Methodology, Supervision, Writing – review & editing

  * E-mail: beatriz.beamud@uv.es (BB); fernando.gonzalez@uv.es (FG-C)

  Affiliation Joint Research Unit “Infection and Public Health” FISABIO-University of Valencia, Institute for Integrative Systems Biology (I2SysBio), Valencia, Spain

  https://orcid.org/0000-0003-0863-3390

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• Iván Ansari,

  Roles Software

  Affiliation Joint Research Unit “Infection and Public Health” FISABIO-University of Valencia, Institute for Integrative Systems Biology (I2SysBio), Valencia, Spain

  https://orcid.org/0000-0003-0545-3837

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• Carlos Francés-Cuesta,

  Roles Data curation, Resources

  Affiliation Joint Research Unit “Infection and Public Health” FISABIO-University of Valencia, Institute for Integrative Systems Biology (I2SysBio), Valencia, Spain

  https://orcid.org/0000-0003-4195-054X

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• Neris García-González,

  Roles Data curation, Resources

  Affiliation Joint Research Unit “Infection and Public Health” FISABIO-University of Valencia, Institute for Integrative Systems Biology (I2SysBio), Valencia, Spain

  https://orcid.org/0000-0001-9089-4033

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• Lorena Mejía,

  Roles Data curation, Resources

  Affiliations Joint Research Unit “Infection and Public Health” FISABIO-University of Valencia, Institute for Integrative Systems Biology (I2SysBio), Valencia, Spain, Instituto de Microbiología, Colegio de Ciencias Biológicas y Ambientales, Universidad San Francisco de Quito, Quito, Ecuador

  https://orcid.org/0000-0002-7600-6543

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• Paula Ruiz-Hueso,

  Roles Data curation, Resources

  Affiliation Joint Research Unit “Infection and Public Health” FISABIO-University of Valencia, Institute for Integrative Systems Biology (I2SysBio), Valencia, Spain

  https://orcid.org/0000-0003-0217-471X

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• Fernando González-Candelas

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – review & editing

  * E-mail: beatriz.beamud@uv.es (BB); fernando.gonzalez@uv.es (FG-C)

  Affiliations Joint Research Unit “Infection and Public Health” FISABIO-University of Valencia, Institute for Integrative Systems Biology (I2SysBio), Valencia, Spain, CIBER in Epidemiology and Public Health, Valencia, Spain

  https://orcid.org/0000-0002-0879-5798

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