Predicting cell lineages using autoencoders and optimal transport

• Karren Dai Yang,

  Roles Conceptualization, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliations Institute for Data, Systems and Society, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America, Department of Electrical Engineering & Computer Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America, Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

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• Karthik Damodaran,

  Roles Validation, Writing – original draft

  Affiliation Mechanobiology Institute, National University of Singapore, Singapore

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• Saradha Venkatachalapathy,

  Roles Validation, Writing – review & editing

  Affiliation Mechanobiology Institute, National University of Singapore, Singapore

  http://orcid.org/0000-0002-7639-0506

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• Ali C. Soylemezoglu,

  Roles Methodology

  Affiliation Institute for Data, Systems and Society, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America

  http://orcid.org/0000-0002-9338-9232

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• G. V. Shivashankar,

  Roles Conceptualization, Funding acquisition, Validation, Writing – original draft, Writing – review & editing

  Affiliations Mechanobiology Institute, National University of Singapore, Singapore, FIRC Institute of Molecular Oncology (IFOM), Milan, Italy, Department of Health Sciences and Technology, ETH Zurich and Paul Scherrer Institute, Villigen, Switzerland

  http://orcid.org/0000-0002-3445-4567

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• Caroline Uhler

  Roles Conceptualization, Funding acquisition, Methodology, Writing – original draft, Writing – review & editing

  * E-mail: cuhler@mit.edu

  Affiliations Institute for Data, Systems and Society, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America, Department of Electrical Engineering & Computer Science, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America, Department of Biosystems Science and Engineering, ETH Zurich, Zurich, Switzerland

  http://orcid.org/0000-0002-7008-0216

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