3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries

• Christopher T. Lee ,

  Contributed equally to this work with: Christopher T. Lee, Justin G. Laughlin

  Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Mechanical and Aerospace Engineering, University of California, San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0002-0670-2308

  ⨯
• Justin G. Laughlin ,

  Contributed equally to this work with: Christopher T. Lee, Justin G. Laughlin

  Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Mechanical and Aerospace Engineering, University of California, San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0001-8229-9760

  ⨯
• Nils Angliviel de La Beaumelle,

  Roles Data curation, Visualization

  Affiliation Department of Mechanical and Aerospace Engineering, University of California, San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0001-6052-2976

  ⨯
• Rommie E. Amaro,

  Roles Conceptualization, Funding acquisition, Resources, Supervision, Writing – review & editing

  Affiliation Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0002-9275-9553

  ⨯
• J. Andrew McCammon,

  Roles Conceptualization, Funding acquisition, Resources, Supervision, Writing – review & editing

  Affiliation Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California, United States of America

  ⨯
• Ravi Ramamoorthi,

  Roles Supervision, Writing – review & editing

  Affiliation Department of Computer Science and Engineering, University of California, San Diego, La Jolla, California, United States of America

  ⨯
• Michael Holst,

  Roles Conceptualization, Funding acquisition, Methodology, Resources, Supervision, Writing – review & editing

  Affiliation Department of Mathematics, University of California, San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0002-3064-4697

  ⨯
• Padmini Rangamani

  Roles Conceptualization, Formal analysis, Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: prangamani@ucsd.edu

  Affiliation Department of Mechanical and Aerospace Engineering, University of California, San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0001-5953-4347

  ⨯