BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale

Qingyu Chen; Kyubum Lee; Shankai Yan; Sun Kim; Chih-Hsuan Wei; Zhiyong Lu

doi:10.1371/journal.pcbi.1007617

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Open Access

Peer-reviewed

Research Article

BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale

Qingyu Chen,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Writing – original draft, Writing – review & editing

Affiliation National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, Maryland, United States of America

http://orcid.org/0000-0002-6036-1516

⨯
Kyubum Lee,

Roles Data curation, Formal analysis, Validation, Writing – review & editing

Affiliation National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, Maryland, United States of America

http://orcid.org/0000-0003-2015-3939

⨯
Shankai Yan,

Roles Data curation, Formal analysis, Validation, Writing – review & editing

Affiliation National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, Maryland, United States of America

http://orcid.org/0000-0003-0369-4979

⨯
Sun Kim,

Roles Data curation, Formal analysis, Investigation, Methodology, Software, Writing – review & editing

Affiliation National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, Maryland, United States of America
⨯
Chih-Hsuan Wei,

Roles Formal analysis, Writing – review & editing

Affiliation National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, Maryland, United States of America
⨯
Zhiyong Lu

Roles Conceptualization, Investigation, Methodology, Project administration, Supervision, Writing – review & editing

* E-mail: zhiyong.lu@nih.gov

Affiliation National Center for Biotechnology Information (NCBI), National Library of Medicine (NLM), National Institutes of Health (NIH), Bethesda, Maryland, United States of America

http://orcid.org/0000-0001-9998-916X

⨯

BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale

Qingyu Chen,
Kyubum Lee,
Shankai Yan,
Sun Kim,
Chih-Hsuan Wei,
Zhiyong Lu

Published: April 23, 2020
https://doi.org/10.1371/journal.pcbi.1007617

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