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Open Access
Peer-reviewed
Research Article
Host factor prioritization for pan-viral genetic perturbation screens using random intercept models and network propagation
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Simon Dirmeier,
Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft
Affiliations Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, SIB Swiss Institute of Bioinformatics, Basel, Switzerland
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Christopher Dächert,
Roles Data curation, Investigation, Resources, Validation, Writing – review & editing
Affiliations Research Group “Dynamics of Early Viral Infection and the Innate Antiviral Response” (division F170), German Cancer Research Center, Heidelberg, Germany, Faculty of Biosciences, Heidelberg University, Heidelberg, Germany
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Martijn van Hemert,
Roles Conceptualization, Data curation, Investigation, Resources, Writing – review & editing
Affiliation Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands
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Ali Tas,
Roles Data curation, Investigation, Writing – review & editing
Affiliation Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands
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Natacha S. Ogando,
Roles Data curation, Investigation, Writing – review & editing
Affiliation Department of Medical Microbiology, Leiden University Medical Center, Leiden, The Netherlands
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Frank van Kuppeveld,
Roles Conceptualization, Data curation, Investigation, Resources, Writing – review & editing
Affiliation Virology Division, Department of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
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Ralf Bartenschlager,
Roles Conceptualization, Data curation, Investigation, Resources, Writing – review & editing
Affiliations Department for Infectious Diseases, Molecular Virology, Heidelberg University, Heidelberg, Germany, Division Virus-Associated Carcinogenesis, German Cancer Research Center, Heidelberg, Germany
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Lars Kaderali,
Roles Conceptualization, Funding acquisition, Investigation, Project administration, Supervision, Writing – review & editing
Affiliation University Medicine Greifswald, Institute of Bioinformatics, Greifswald, Germany
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Marco Binder,
Roles Conceptualization, Funding acquisition, Investigation, Project administration, Supervision, Writing – review & editing
Affiliation Research Group “Dynamics of Early Viral Infection and the Innate Antiviral Response” (division F170), German Cancer Research Center, Heidelberg, Germany
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Niko Beerenwinkel
Roles Conceptualization, Project administration, Supervision, Writing – review & editing
* E-mail: niko.beerenwinkel@bsse.ethz.ch
Affiliations Department of Biosystems Science and Engineering, ETH Zurich, Basel, Switzerland, SIB Swiss Institute of Bioinformatics, Basel, Switzerland
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Host factor prioritization for pan-viral genetic perturbation screens using random intercept models and network propagation
- Simon Dirmeier,
- Christopher Dächert,
- Martijn van Hemert,
- Ali Tas,
- Natacha S. Ogando,
- Frank van Kuppeveld,
- Ralf Bartenschlager,
- Lars Kaderali,
- Marco Binder,
- Niko Beerenwinkel
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- Published: February 10, 2020
- https://doi.org/10.1371/journal.pcbi.1007587