VAMPr: VAriant Mapping and Prediction of antibiotic resistance via explainable features and machine learning

• Jiwoong Kim ,

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Software, Validation, Writing – original draft

  ¶‡ These authors share first authorship on this work.

  Affiliation Quantitative Biomedical Research Center, Department of Population and Data Sciences, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America

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• David E. Greenberg ,

  Roles Conceptualization, Data curation, Funding acquisition, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: David.Greenberg@UTSouthwestern.edu (DEG); Xiaowei.Zhan@UTSouthwestern.edu (XZ)

  ¶‡ These authors share first authorship on this work.

  Affiliations Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America, Department of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America

  http://orcid.org/0000-0002-5101-3106

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• Reed Pifer,

  Roles Conceptualization

  Affiliation Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America

  http://orcid.org/0000-0002-9648-450X

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• Shuang Jiang,

  Roles Formal analysis, Visualization, Writing – original draft

  Affiliation Department of Statistical Science, Southern Methodist University, Dallas, TX, United States of America

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• Guanghua Xiao,

  Roles Conceptualization, Methodology, Supervision

  Affiliations Quantitative Biomedical Research Center, Department of Population and Data Sciences, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America, Harold C. Simmons Cancer Center, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America, Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America

  http://orcid.org/0000-0001-9387-9883

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• Samuel A. Shelburne,

  Roles Conceptualization, Validation

  Affiliation Department of Infectious Diseases and Genomic Medicine, University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America

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• Andrew Koh,

  Roles Conceptualization, Visualization

  Affiliations Department of Microbiology, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America, Harold C. Simmons Cancer Center, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America, Department of Pediatrics, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America

  http://orcid.org/0000-0003-2172-5126

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• Yang Xie,

  Roles Conceptualization, Funding acquisition, Methodology, Resources, Supervision

  Affiliations Quantitative Biomedical Research Center, Department of Population and Data Sciences, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America, Harold C. Simmons Cancer Center, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America, Department of Bioinformatics, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America

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• Xiaowei Zhan

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: David.Greenberg@UTSouthwestern.edu (DEG); Xiaowei.Zhan@UTSouthwestern.edu (XZ)

  Affiliations Quantitative Biomedical Research Center, Department of Population and Data Sciences, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America, Harold C. Simmons Cancer Center, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America, Center for Genetics of Host Defense, University of Texas Southwestern Medical Center, Dallas, Texas, United States of America

  http://orcid.org/0000-0002-6249-7193

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