Better together: Elements of successful scientific software development in a distributed collaborative community

• Julia Koehler Leman ,

  Contributed equally to this work with: Julia Koehler Leman, Brian D. Weitzner

  * E-mail: julia.koehler.leman@gmail.com (JKL); bweitzner@lyell.com (BDW); jgray@jhu.edu (JJG); bonneau@nyu.edu (RB)

  Affiliations Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, United States of America, Dept of Biology, New York University, New York, NY, United States of America

  http://orcid.org/0000-0002-5693-3593

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• Brian D. Weitzner ,

  Contributed equally to this work with: Julia Koehler Leman, Brian D. Weitzner

  * E-mail: julia.koehler.leman@gmail.com (JKL); bweitzner@lyell.com (BDW); jgray@jhu.edu (JJG); bonneau@nyu.edu (RB)

  Affiliations Dept of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, United States of America, Dept of Biochemistry, University of Washington, Seattle, WA, United States of America, Institute for Protein Design, University of Washington, Seattle, WA, United States of America, Lyell Immunopharma, Seattle, WA, United States of America

  http://orcid.org/0000-0002-1909-0961

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• P. Douglas Renfrew,

  Affiliation Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, United States of America

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• Steven M. Lewis,

  Affiliations Dept of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America, Dept of Biochemistry, Duke University, Durham, NC, United States of America, Cyrus Biotechnology, Seattle, WA United States of America

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• Rocco Moretti,

  Affiliation Dept of Chemistry, Vanderbilt University, Nashville, TN, United States of America

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• Andrew M. Watkins,

  Affiliation Dept of Biochemistry, Stanford University School of Medicine, Stanford CA, United States of America

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• Vikram Khipple Mulligan,

  Affiliations Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, United States of America, Dept of Biochemistry, University of Washington, Seattle, WA, United States of America, Institute for Protein Design, University of Washington, Seattle, WA, United States of America

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• Sergey Lyskov,

  Affiliation Dept of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, United States of America

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• Jared Adolf-Bryfogle,

  Affiliation Dept of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, United States of America

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• Jason W. Labonte,

  Affiliations Dept of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, United States of America, Dept of Chemistry, Franklin & Marshall College, Lancaster, PA, United States of America

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• Justyna Krys,

  Affiliation Dept of Chemistry, University of Warsaw, Warsaw, Poland

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• RosettaCommons Consortium ,

  ¶Membership of the RosettaCommons Consortium is listed in the S1 List.

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• Christopher Bystroff,

  Affiliation Dept of Biological Sciences, Rensselaer Polytechnic Institute, Troy, NY, United States of America

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• William Schief,

  Affiliation Dept of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA, United States of America

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• Dominik Gront,

  Affiliation Dept of Chemistry, University of Warsaw, Warsaw, Poland

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• Ora Schueler-Furman,

  Affiliation Dept of Microbiology and Molecular Genetics, IMRIC, Ein Kerem Faculty of Medicine, Hebrew University of Jerusalem, Jerusalem, Israel

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• David Baker,

  Affiliations Dept of Biochemistry, University of Washington, Seattle, WA, United States of America, Institute for Protein Design, University of Washington, Seattle, WA, United States of America

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• Philip Bradley,

  Affiliation Fred Hutchinson Cancer Research Center, Seattle, WA, United States of America

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• Roland Dunbrack,

  Affiliation Institute for Cancer Research, Fox Chase Cancer Center, Philadelphia PA, United States of America

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• Tanja Kortemme,

  Affiliation Dept of Bioengineering and Therapeutic Sciences, University of California San Francisco, CA, United States of America

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• Andrew Leaver-Fay,

  Affiliation Dept of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America

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• Charlie E. M. Strauss,

  Affiliation Bioscience Division, Los Alamos National Laboratory, Los Alamos, NM, United States of America

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• Jens Meiler,

  Affiliations Depts of Chemistry, Pharmacology and Biomedical Informatics, Vanderbilt University, Nashville, TN, United States of America, Center for Structural Biology, Vanderbilt University, Nashville, TN, United States of America, Institute for Chemical Biology, Vanderbilt University, Nashville, TN, United States of America, Institute for Drug Discovery, Leipzig University, Leipzig, Germany

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• Brian Kuhlman,

  Affiliation Dept of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC, United States of America

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• Jeffrey J. Gray ,

  * E-mail: julia.koehler.leman@gmail.com (JKL); bweitzner@lyell.com (BDW); jgray@jhu.edu (JJG); bonneau@nyu.edu (RB)

  Affiliation Dept of Chemical and Biomolecular Engineering, Johns Hopkins University, Baltimore, MD, United States of America

  http://orcid.org/0000-0001-6380-2324

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•  [ ... ],
• Richard Bonneau

  * E-mail: julia.koehler.leman@gmail.com (JKL); bweitzner@lyell.com (BDW); jgray@jhu.edu (JJG); bonneau@nyu.edu (RB)

  Affiliations Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, United States of America, Dept of Biology, New York University, New York, NY, United States of America, Dept of Computer Science, New York University, New York, NY, United States of America, Center for Data Science, New York University, New York, NY, United States of America

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