Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction

Yufeng Su; Yunan Luo; Xiaoming Zhao; Yang Liu; Jian Peng

doi:10.1371/journal.pcbi.1007283

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Open Access

Peer-reviewed

Research Article

Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction

Yufeng Su ,

Contributed equally to this work with: Yufeng Su, Yunan Luo

Roles Formal analysis, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

Affiliations Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America, School of Electronic Information and Electrical Engineering, Shanghai Jiao Tong University, Shanghai, China
⨯
Yunan Luo ,

Contributed equally to this work with: Yufeng Su, Yunan Luo

Roles Methodology, Visualization, Writing – original draft, Writing – review & editing

Affiliation Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America

http://orcid.org/0000-0001-7728-6412

⨯
Xiaoming Zhao,

Roles Visualization, Writing – original draft

Affiliation Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America

http://orcid.org/0000-0001-7214-5426

⨯
Yang Liu,

Roles Methodology, Software

Affiliation Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America
⨯
Jian Peng

Roles Conceptualization, Data curation, Formal analysis, Methodology, Supervision, Writing – original draft, Writing – review & editing

* E-mail: jianpeng@illinois.edu

Affiliation Department of Computer Science, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America

http://orcid.org/0000-0002-1736-2978

⨯

Integrating thermodynamic and sequence contexts improves protein-RNA binding prediction

Yufeng Su,
Yunan Luo,
Xiaoming Zhao,
Yang Liu,
Jian Peng

Published: September 4, 2019
https://doi.org/10.1371/journal.pcbi.1007283

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RNA structure
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Protein structure prediction
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RNA-binding proteins
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Neural networks
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RNA sequences
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Thermodynamics
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Protein structure networks
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Protein structure comparison
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