ASA³P: An automatic and scalable pipeline for the assembly, annotation and higher-level analysis of closely related bacterial isolates

• Oliver Schwengers ,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft

  * E-mail: oliver.schwengers@computational.bio.uni-giessen.de

  Affiliations Bioinformatics and Systems Biology, Justus Liebig University Giessen, Giessen, Germany, Institute of Medical Microbiology, Justus Liebig University Giessen, Giessen, Germany, German Center for Infection Research (DZIF), partner site Giessen-Marburg-Langen, Giessen, Germany

  http://orcid.org/0000-0003-4216-2721

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• Andreas Hoek,

  Roles Software, Visualization

  Affiliation Bioinformatics and Systems Biology, Justus Liebig University Giessen, Giessen, Germany

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• Moritz Fritzenwanker,

  Roles Methodology, Validation

  Affiliations Institute of Medical Microbiology, Justus Liebig University Giessen, Giessen, Germany, German Center for Infection Research (DZIF), partner site Giessen-Marburg-Langen, Giessen, Germany

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• Linda Falgenhauer,

  Roles Methodology, Validation, Writing – review & editing

  Affiliations Institute of Medical Microbiology, Justus Liebig University Giessen, Giessen, Germany, German Center for Infection Research (DZIF), partner site Giessen-Marburg-Langen, Giessen, Germany

  http://orcid.org/0000-0003-4706-8507

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• Torsten Hain,

  Roles Conceptualization, Funding acquisition, Methodology, Resources, Validation, Writing – review & editing

  Affiliations Institute of Medical Microbiology, Justus Liebig University Giessen, Giessen, Germany, German Center for Infection Research (DZIF), partner site Giessen-Marburg-Langen, Giessen, Germany

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• Trinad Chakraborty ,

  Contributed equally to this work with: Trinad Chakraborty, Alexander Goesmann

  Roles Conceptualization, Funding acquisition, Resources, Writing – review & editing

  Affiliations Institute of Medical Microbiology, Justus Liebig University Giessen, Giessen, Germany, German Center for Infection Research (DZIF), partner site Giessen-Marburg-Langen, Giessen, Germany

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• Alexander Goesmann

  Contributed equally to this work with: Trinad Chakraborty, Alexander Goesmann

  Roles Conceptualization, Funding acquisition, Resources, Writing – review & editing

  Affiliations Bioinformatics and Systems Biology, Justus Liebig University Giessen, Giessen, Germany, German Center for Infection Research (DZIF), partner site Giessen-Marburg-Langen, Giessen, Germany

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