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Open Access
Peer-reviewed
Research Article
A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data
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Ajeet K. Sharma ,
Contributed equally to this work with: Ajeet K. Sharma, Pietro Sormanni, Nabeel Ahmed
Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing
Current address: Department of Physics, Indian Institute of Technology, Jammu, India
Affiliation Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania, United States of America
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Pietro Sormanni ,
Contributed equally to this work with: Ajeet K. Sharma, Pietro Sormanni, Nabeel Ahmed
Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing
Affiliation Centre for Misfolding Diseases, Department of Chemistry, University of Cambridge, Cambridge, United Kingdom
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Nabeel Ahmed ,
Contributed equally to this work with: Ajeet K. Sharma, Pietro Sormanni, Nabeel Ahmed
Roles Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing
Affiliation Bioinformatics and Genomics Graduate Program, The Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania, United States of America
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Prajwal Ciryam,
Roles Conceptualization, Data curation, Investigation, Methodology, Visualization, Writing – original draft, Writing – review & editing
Current address: Department of Neurology, Columbia University College of Physicians and Surgeons, New York, New York, United States of America
Affiliation Centre for Misfolding Diseases, Department of Chemistry, University of Cambridge, Cambridge, United Kingdom
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Ulrike A. Friedrich,
Roles Data curation, Writing – review & editing
Affiliations Center for Molecular Biology of the Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, Heidelberg, Germany, German Cancer Research Center (DKFZ), Heidelberg, Germany
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Günter Kramer,
Roles Data curation, Resources, Writing – review & editing
Affiliations Center for Molecular Biology of the Heidelberg University (ZMBH), DKFZ-ZMBH Alliance, Heidelberg, Germany, German Cancer Research Center (DKFZ), Heidelberg, Germany
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Edward P. O’Brien
Roles Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing
* E-mail: epo2@psu.edu
Affiliations Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania, United States of America, Bioinformatics and Genomics Graduate Program, The Huck Institutes of the Life Sciences, Pennsylvania State University, University Park, Pennsylvania, United States of America, Institute for CyberScience, Pennsylvania State University, University Park, Pennsylvania, United States of America
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A chemical kinetic basis for measuring translation initiation and elongation rates from ribosome profiling data
- Ajeet K. Sharma,
- Pietro Sormanni,
- Nabeel Ahmed,
- Prajwal Ciryam,
- Ulrike A. Friedrich,
- Günter Kramer,
- Edward P. O’Brien
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- Published: May 23, 2019
- https://doi.org/10.1371/journal.pcbi.1007070