Ten simple rules for writing and sharing computational analyses in Jupyter Notebooks

• Adam Rule,

  Affiliation Design Lab, UC San Diego, La Jolla, California, United States of America

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• Amanda Birmingham,

  Affiliation Center for Computational Biology and Bioinformatics, UC San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0002-4117-3317

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• Cristal Zuniga,

  Affiliation Department of Pediatrics, UC San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0002-0135-7429

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• Ilkay Altintas,

  Affiliation Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0002-2196-0305

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• Shih-Cheng Huang,

  Current address: Biomedical Informatics Graduate Program, Stanford University, Stanford, CA, United States of America

  Affiliation Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0001-9882-833X

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• Rob Knight,

  Affiliations Department of Pediatrics, UC San Diego, La Jolla, California, United States of America, Departments of Bioengineering, and Computer Science and Engineering, and Center for Microbiome Innovation, UC San Diego, La Jolla, California, United States of America

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• Niema Moshiri,

  Affiliation Bioinformatics and Systems Biology Graduate Program, UC San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0003-2209-8128

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• Mai H. Nguyen,

  Affiliation Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America

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• Sara Brin Rosenthal,

  Affiliation Center for Computational Biology and Bioinformatics, UC San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0002-6548-9658

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• Fernando Pérez,

  Affiliation Department of Statistics and Berkeley Institute for Data Science, UC Berkeley, and Lawrence Berkeley National Laboratory, Berkeley, California, United States of America

  http://orcid.org/0000-0002-1725-9815

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• Peter W. Rose

  * E-mail: pwrose@ucsd.edu

  Affiliation Data Science Hub, San Diego Supercomputer Center, UC San Diego, La Jolla, California, United States of America

  http://orcid.org/0000-0001-9981-9750

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