MAPS: Model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments

• Ivan Juric ,

  Contributed equally to this work with: Ivan Juric, Miao Yu

  Roles Formal analysis, Methodology, Software

  Affiliation Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, United States of America

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• Miao Yu ,

  Contributed equally to this work with: Ivan Juric, Miao Yu

  Roles Formal analysis, Methodology, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Ludwig Institute for Cancer Research, La Jolla, CA, United States of America

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• Armen Abnousi,

  Roles Formal analysis, Software

  Affiliation Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, United States of America

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• Ramya Raviram,

  Roles Formal analysis

  Affiliation Ludwig Institute for Cancer Research, La Jolla, CA, United States of America

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• Rongxin Fang,

  Roles Formal analysis

  Affiliations Ludwig Institute for Cancer Research, La Jolla, CA, United States of America, Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA, United States of America

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• Yuan Zhao,

  Roles Formal analysis

  Affiliations Ludwig Institute for Cancer Research, La Jolla, CA, United States of America, Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA, United States of America

  http://orcid.org/0000-0001-8471-872X

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• Yanxiao Zhang,

  Roles Formal analysis

  Affiliation Ludwig Institute for Cancer Research, La Jolla, CA, United States of America

  http://orcid.org/0000-0001-9618-637X

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• Yunjiang Qiu,

  Roles Formal analysis

  Affiliations Ludwig Institute for Cancer Research, La Jolla, CA, United States of America, Bioinformatics and Systems Biology Graduate Program, University of California, San Diego, La Jolla, CA, United States of America

  http://orcid.org/0000-0002-0539-9714

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• Yuchen Yang,

  Roles Formal analysis

  Affiliation Departments of Genetics, Biostatistics, and Computer Science, University of North Carolina, Chapel Hill, NC, United States of America

  http://orcid.org/0000-0001-5977-1617

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• Yun Li,

  Roles Formal analysis

  Affiliation Departments of Genetics, Biostatistics, and Computer Science, University of North Carolina, Chapel Hill, NC, United States of America

  http://orcid.org/0000-0002-9275-4189

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• Bing Ren ,

  Roles Conceptualization, Funding acquisition, Methodology, Supervision, Writing – review & editing

  * E-mail: biren@ucsd.edu (BR); hum@ccf.org (MH)

  Affiliations Ludwig Institute for Cancer Research, La Jolla, CA, United States of America, Department of Cellular and Molecular Medicine, Center for Epigenomics, University of California, San Diego School of Medicine, La Jolla, CA, United States of America

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• Ming Hu

  Roles Conceptualization, Formal analysis, Funding acquisition, Methodology, Software, Supervision, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: biren@ucsd.edu (BR); hum@ccf.org (MH)

  Affiliation Department of Quantitative Health Sciences, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH, United States of America

  http://orcid.org/0000-0003-0987-2916

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