Prediction of VRC01 neutralization sensitivity by HIV-1 gp160 sequence features

• Craig A. Magaret ,

  Contributed equally to this work with: Craig A. Magaret, David C. Benkeser, Brian D. Williamson

  Roles Conceptualization, Data curation, Formal analysis, Methodology, Project administration, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Vaccine and Infectious Disease Division and Statistical Center for HIV/AIDS Research and Prevention, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America

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• David C. Benkeser ,

  Contributed equally to this work with: Craig A. Magaret, David C. Benkeser, Brian D. Williamson

  Roles Formal analysis, Methodology, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Biostatistics and Bioinformatics, Rollins School of Public Health, Emory University, Atlanta, Georgia, United States of America

  http://orcid.org/0000-0002-1019-8343

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• Brian D. Williamson ,

  Contributed equally to this work with: Craig A. Magaret, David C. Benkeser, Brian D. Williamson

  Roles Formal analysis, Methodology, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Department of Biostatistics, University of Washington, Seattle, Washington, United States of America

  http://orcid.org/0000-0002-7024-548X

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• Bhavesh R. Borate,

  Roles Formal analysis, Software, Visualization, Writing – original draft, Writing – review & editing

  Affiliation Vaccine and Infectious Disease Division and Statistical Center for HIV/AIDS Research and Prevention, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America

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• Lindsay N. Carpp,

  Roles Visualization, Writing – original draft, Writing – review & editing

  Affiliation Vaccine and Infectious Disease Division and Statistical Center for HIV/AIDS Research and Prevention, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America

  http://orcid.org/0000-0003-0333-5925

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• Ivelin S. Georgiev,

  Roles Methodology, Software, Supervision, Writing – review & editing

  Affiliations Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America, Department of Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America, Department of Electrical Engineering and Computer Science, Vanderbilt University, Nashville, Tennessee, United States of America

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• Ian Setliff,

  Roles Formal analysis, Methodology, Software, Writing – review & editing

  Affiliations Vanderbilt Vaccine Center, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America, Program in Chemical & Physical Biology, Vanderbilt University Medical Center, Nashville, Tennessee, United States of America

  http://orcid.org/0000-0003-4726-6132

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• Adam S. Dingens,

  Roles Conceptualization, Writing – review & editing

  Affiliations Division of Basic Sciences and Computational Biology Program, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America, Division of Human Biology and Epidemiology Program, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America, Molecular and Cellular Biology PhD Program, University of Washington, Seattle, Washington, United States of America

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• Noah Simon,

  Roles Methodology, Supervision, Writing – review & editing

  Affiliation Department of Biostatistics, University of Washington, Seattle, Washington, United States of America

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• Marco Carone,

  Roles Methodology, Supervision, Writing – review & editing

  Affiliation Department of Biostatistics, University of Washington, Seattle, Washington, United States of America

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• Christopher Simpkins,

  Roles Visualization, Writing – review & editing

  Affiliation Vaccine and Infectious Disease Division and Statistical Center for HIV/AIDS Research and Prevention, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America

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• David Montefiori,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliation Duke University School of Medicine, Duke University, Durham, North Carolina, United States of America

  http://orcid.org/0000-0003-0856-6319

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• Galit Alter,

  Roles Methodology, Supervision, Writing – review & editing

  Affiliation Ragon Institute of MGH, MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Wen-Han Yu,

  Roles Formal analysis, Methodology, Software, Writing – review & editing

  Affiliation Ragon Institute of MGH, MIT and Harvard, Cambridge, Massachusetts, United States of America

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• Michal Juraska,

  Roles Conceptualization, Writing – review & editing

  Affiliation Vaccine and Infectious Disease Division and Statistical Center for HIV/AIDS Research and Prevention, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America

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• Paul T. Edlefsen,

  Roles Conceptualization, Writing – review & editing

  Affiliation Vaccine and Infectious Disease Division and Statistical Center for HIV/AIDS Research and Prevention, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America

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• Shelly Karuna,

  Roles Project administration, Writing – review & editing

  Affiliation Vaccine and Infectious Disease Division and Statistical Center for HIV/AIDS Research and Prevention, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America

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• Nyaradzo M. Mgodi,

  Roles Project administration, Writing – review & editing

  Affiliation University of Zimbabwe College of Health Sciences Clinical Trials Research Centre, Harare, Zimbabwe

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• Srilatha Edugupanti,

  Roles Project administration, Writing – review & editing

  Affiliation Department of Medicine, Division of Infectious Diseases, Emory University, Atlanta, Georgia, United States of America

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•  [ ... ],
• Peter B. Gilbert

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: pgilbert@scharp.org

  Affiliations Vaccine and Infectious Disease Division and Statistical Center for HIV/AIDS Research and Prevention, Fred Hutchinson Cancer Research Center, Seattle, Washington, United States of America, Department of Biostatistics, University of Washington, Seattle, Washington, United States of America

  http://orcid.org/0000-0002-2662-9427

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