Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data

Finlay Campbell; Anne Cori; Neil Ferguson; Thibaut Jombart

doi:10.1371/journal.pcbi.1006930

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Open Access

Peer-reviewed

Research Article

Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data

Finlay Campbell ,

Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: f.campbell15@imperial.ac.uk (FC); thibautjombart@gmail.com (TJ)

Affiliation MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, United Kingdom

http://orcid.org/0000-0002-1849-1886

⨯
Anne Cori,

Roles Conceptualization, Methodology, Supervision, Writing – review & editing

Affiliation MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, United Kingdom
⨯
Neil Ferguson,

Roles Conceptualization, Funding acquisition, Methodology, Supervision, Writing – review & editing

Affiliation MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, United Kingdom

http://orcid.org/0000-0002-1154-8093

⨯
Thibaut Jombart

Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: f.campbell15@imperial.ac.uk (FC); thibautjombart@gmail.com (TJ)

Affiliations MRC Centre for Global Infectious Disease Analysis, Department of Infectious Disease Epidemiology, School of Public Health, Imperial College London, United Kingdom, Department of Infectious Disease Epidemiology, London School of Hygiene & Tropical Medicine, London, United Kingdom, UK Public Health Rapid Support Team, London, United Kingdom
⨯

Bayesian inference of transmission chains using timing of symptoms, pathogen genomes and contact data

Finlay Campbell,
Anne Cori,
Neil Ferguson,
Thibaut Jombart

Published: March 29, 2019
https://doi.org/10.1371/journal.pcbi.1006930

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