New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx

• Mohamed Mounir ,

  Contributed equally to this work with: Mohamed Mounir, Marta Lucchetta

  Roles Data curation, Formal analysis, Methodology, Software, Visualization, Writing – review & editing

  Affiliation Computational Biology Laboratory, Danish Cancer Society Research Center, Copenhagen, Denmark

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• Marta Lucchetta ,

  Contributed equally to this work with: Mohamed Mounir, Marta Lucchetta

  Roles Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing – review & editing

  Affiliation Computational Biology Laboratory, Danish Cancer Society Research Center, Copenhagen, Denmark

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• Tiago C. Silva,

  Roles Data curation, Software, Writing – review & editing

  Affiliation Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, Brazil

  http://orcid.org/0000-0003-1343-6850

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• Catharina Olsen,

  Roles Writing – review & editing

  Affiliations Interuniversity Institute of Bioinformatics in Brussels (IB)2, Brussels, Belgium, Machine Learning Group (MLG), Department d’Informatique, Université libre de Bruxelles (ULB), Brussels, Belgium

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• Gianluca Bontempi,

  Roles Funding acquisition, Writing – review & editing

  Affiliations Interuniversity Institute of Bioinformatics in Brussels (IB)2, Brussels, Belgium, Machine Learning Group (MLG), Department d’Informatique, Université libre de Bruxelles (ULB), Brussels, Belgium

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• Xi Chen,

  Roles Funding acquisition, Writing – review & editing

  Affiliations Sylvester Comprehensive Cancer Center, Miami, Florida, United States of America, Division of Biostatistics, Department of Public Health Science, University of Miami Miller School of Medicine, Miami, Florida, United States of America

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• Houtan Noushmehr,

  Roles Funding acquisition, Writing – review & editing

  Affiliations Department of Genetics, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto, Brazil, Department of Neurosurgery, Henry Ford Hospital, Detroit, Michigan, United States of America

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• Antonio Colaprico ,

  Roles Data curation, Methodology, Software, Supervision, Writing – review & editing

  * E-mail: axc1833@med.miami.edu (AC); elenap@cancer.dk (EP)

  Affiliations Interuniversity Institute of Bioinformatics in Brussels (IB)2, Brussels, Belgium, Machine Learning Group (MLG), Department d’Informatique, Université libre de Bruxelles (ULB), Brussels, Belgium, Division of Biostatistics, Department of Public Health Science, University of Miami Miller School of Medicine, Miami, Florida, United States of America

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• Elena Papaleo

  Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

  * E-mail: axc1833@med.miami.edu (AC); elenap@cancer.dk (EP)

  Affiliations Computational Biology Laboratory, Danish Cancer Society Research Center, Copenhagen, Denmark, Translational Disease Systems Biology, Faculty of Health and Medical Sciences, Novo Nordisk Foundation Center for Protein Research University of Copenhagen, Copenhagen, Denmark

  http://orcid.org/0000-0002-7376-5894

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