Motif-Aware PRALINE: Improving the alignment of motif regions

Maurits Dijkstra; Punto Bawono; Sanne Abeln; K. Anton Feenstra; Wan Fokkink; Jaap Heringa

doi:10.1371/journal.pcbi.1006547

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Open Access

Peer-reviewed

Research Article

Motif-Aware PRALINE: Improving the alignment of motif regions

Maurits Dijkstra ,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: m.j.j.dijkstra@vu.nl

Affiliation Department of Computer Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands

http://orcid.org/0000-0002-7971-6209

⨯
Punto Bawono,

Roles Investigation, Methodology, Validation, Visualization, Writing – original draft

Affiliation Department of Computer Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
⨯
Sanne Abeln,

Roles Conceptualization, Formal analysis, Investigation, Project administration, Supervision, Validation, Writing – original draft, Writing – review & editing

Affiliation Department of Computer Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands

http://orcid.org/0000-0002-2779-7174

⨯
K. Anton Feenstra,

Roles Conceptualization, Data curation, Visualization, Writing – review & editing

Affiliation Department of Computer Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands

http://orcid.org/0000-0001-6755-9667

⨯
Wan Fokkink,

Roles Formal analysis, Funding acquisition, Project administration, Supervision, Validation, Writing – review & editing

Affiliation Department of Computer Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands

http://orcid.org/0000-0001-7443-8978

⨯
Jaap Heringa

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Supervision, Validation, Writing – review & editing

Affiliation Department of Computer Science, Vrije Universiteit Amsterdam, Amsterdam, The Netherlands
⨯

Motif-Aware PRALINE: Improving the alignment of motif regions

Maurits Dijkstra,
Punto Bawono,
Sanne Abeln,
K. Anton Feenstra,
Wan Fokkink,
Jaap Heringa

Published: November 1, 2018
https://doi.org/10.1371/journal.pcbi.1006547

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Sequence alignment
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Multiple alignment calculation
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Sequence motif analysis
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Protein structure comparison
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