A Bayesian model of acquisition and clearance of bacterial colonization incorporating within-host variation

• Marko Järvenpää,

  Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft

  Affiliations Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland, Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health, Boston, MA, USA

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• Mohamad R. Abdul Sater,

  Roles Data curation, Formal analysis, Investigation, Writing – review & editing

  Affiliation Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health, Boston, MA, USA

  http://orcid.org/0000-0003-1912-0590

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• Georgia K. Lagoudas,

  Roles Data curation, Resources, Writing – review & editing

  Affiliations Department of Biological Engineering, MIT, Cambridge, MA, USA, Broad Institute of MIT and Harvard, Cambridge, MA, USA

  http://orcid.org/0000-0002-3165-7801

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• Paul C. Blainey,

  Roles Data curation, Funding acquisition, Resources, Writing – review & editing

  Affiliations Department of Biological Engineering, MIT, Cambridge, MA, USA, Broad Institute of MIT and Harvard, Cambridge, MA, USA

  http://orcid.org/0000-0002-4889-8783

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• Loren G. Miller,

  Roles Data curation, Funding acquisition, Resources, Writing – review & editing

  Affiliation Infectious Disease Clinical Outcomes Research Unit, Division of Infectious Diseases, LA Biomed Research Institute at Harbor–UCLA Medical Center, Torrance, CA, USA

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• James A. McKinnell,

  Roles Data curation, Funding acquisition, Resources, Writing – review & editing

  Affiliation Infectious Disease Clinical Outcomes Research Unit, Division of Infectious Diseases, LA Biomed Research Institute at Harbor–UCLA Medical Center, Torrance, CA, USA

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• Susan S. Huang,

  Roles Data curation, Funding acquisition, Resources, Writing – review & editing

  Affiliation Division of Infectious Diseases and Health Policy Research Institute, University of California, Irvine School of Medicine, Irvine, CA, USA

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• Yonatan H. Grad ,

  Contributed equally to this work with: Yonatan H. Grad, Pekka Marttinen

  Roles Conceptualization, Data curation, Funding acquisition, Methodology, Supervision, Writing – original draft

  * E-mail: ygrad@hsph.harvard.edu (YHG); pekka.marttinen@aalto.fi (PM)

  Affiliation Department of Immunology and Infectious Diseases, Harvard TH Chan School of Public Health, Boston, MA, USA

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• Pekka Marttinen

  Contributed equally to this work with: Yonatan H. Grad, Pekka Marttinen

  Roles Conceptualization, Funding acquisition, Methodology, Software, Supervision, Writing – original draft

  * E-mail: ygrad@hsph.harvard.edu (YHG); pekka.marttinen@aalto.fi (PM)

  Affiliation Helsinki Institute for Information Technology HIIT, Department of Computer Science, Aalto University, Espoo, Finland

  http://orcid.org/0000-0001-7078-7927

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