scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data

• Luyi Tian ,

  Roles Conceptualization, Data curation, Investigation, Resources, Software, Writing – original draft

  * E-mail: tian.l@wehi.edu.au (LT); mritchie@wehi.edu.au (MER)

  Affiliations Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia, Department of Medical Biology, The University of Melbourne, Parkville, Australia

  http://orcid.org/0000-0003-3420-3685

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• Shian Su,

  Roles Data curation, Software

  Affiliation Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia

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• Xueyi Dong,

  Roles Software, Visualization

  Affiliations Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia, College of Life Science, Zhejiang University, Hangzhou, Zhejiang Province, P.R. China

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• Daniela Amann-Zalcenstein,

  Roles Data curation, Resources

  Affiliation Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia

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• Christine Biben,

  Roles Data curation, Resources

  Affiliation Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia

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• Azadeh Seidi,

  Roles Data curation, Resources

  Affiliation Australian Genome Research Facility, Parkville, Australia

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• Douglas J. Hilton,

  Roles Data curation, Resources

  Affiliations Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia, Department of Medical Biology, The University of Melbourne, Parkville, Australia

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• Shalin H. Naik,

  Roles Conceptualization, Data curation, Funding acquisition, Methodology, Resources, Supervision

  Affiliation Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia

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• Matthew E. Ritchie

  Roles Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: tian.l@wehi.edu.au (LT); mritchie@wehi.edu.au (MER)

  Affiliations Molecular Medicine Division, The Walter and Eliza Hall Institute of Medical Research, Parkville, Australia, Department of Medical Biology, The University of Melbourne, Parkville, Australia, School of Mathematics and Statistics, The University of Melbourne, Parkville, Australia

  http://orcid.org/0000-0002-7383-0609

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