COBRAme: A computational framework for genome-scale models of metabolism and gene expression

• Colton J. Lloyd ,

  Contributed equally to this work with: Colton J. Lloyd, Ali Ebrahim

  Roles Conceptualization, Investigation, Software, Writing – original draft

  Affiliation Department of Bioengineering, University of California, San Diego, La Jolla, CA, United States of America

  http://orcid.org/0000-0001-6556-6345

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• Ali Ebrahim ,

  Contributed equally to this work with: Colton J. Lloyd, Ali Ebrahim

  Roles Conceptualization, Methodology, Software, Writing – original draft

  Affiliation Department of Bioengineering, University of California, San Diego, La Jolla, CA, United States of America

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• Laurence Yang,

  Roles Methodology, Software, Writing – review & editing

  Affiliation Department of Bioengineering, University of California, San Diego, La Jolla, CA, United States of America

  http://orcid.org/0000-0001-6663-7643

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• Zachary A. King,

  Roles Methodology, Software, Writing – review & editing

  Affiliations Department of Bioengineering, University of California, San Diego, La Jolla, CA, United States of America, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark

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• Edward Catoiu,

  Roles Software, Writing – review & editing

  Affiliation Department of Bioengineering, University of California, San Diego, La Jolla, CA, United States of America

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• Edward J. O’Brien,

  Roles Conceptualization, Methodology, Writing – review & editing

  Affiliation Bioinformatics and Systems Biology Program, University of California, San Diego, La Jolla, CA, United States of America

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• Joanne K. Liu,

  Roles Software, Writing – review & editing

  Affiliation Bioinformatics and Systems Biology Program, University of California, San Diego, La Jolla, CA, United States of America

  http://orcid.org/0000-0001-9973-524X

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• Bernhard O. Palsson

  Roles Project administration, Writing – original draft

  * E-mail: palsson@ucsd.edu

  Affiliations Department of Bioengineering, University of California, San Diego, La Jolla, CA, United States of America, Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Lyngby, Denmark, Department of Pediatrics, University of California, San Diego, La Jolla, CA, United States of America

  http://orcid.org/0000-0003-2357-6785

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