Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models

• Méziane Aite ,

  Contributed equally to this work with: Méziane Aite, Marie Chevallier, Clémence Frioux, Camille Trottier

  Roles Conceptualization, Data curation, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliation IRISA, Univ Rennes, Inria, CNRS, Rennes, France

  http://orcid.org/0000-0001-9086-1485

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• Marie Chevallier ,

  Contributed equally to this work with: Méziane Aite, Marie Chevallier, Clémence Frioux, Camille Trottier

  Roles Conceptualization, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliations IRISA, Univ Rennes, Inria, CNRS, Rennes, France, ECOBIO, Univ Rennes, CNRS, Rennes, France

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• Clémence Frioux ,

  Contributed equally to this work with: Méziane Aite, Marie Chevallier, Clémence Frioux, Camille Trottier

  Roles Conceptualization, Data curation, Methodology, Software, Writing – original draft, Writing – review & editing

  Affiliation IRISA, Univ Rennes, Inria, CNRS, Rennes, France

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• Camille Trottier ,

  Contributed equally to this work with: Méziane Aite, Marie Chevallier, Clémence Frioux, Camille Trottier

  Roles Data curation, Investigation, Validation, Writing – original draft, Writing – review & editing

  Affiliations IRISA, Univ Rennes, Inria, CNRS, Rennes, France, UMR 6004 ComBi, Université de Nantes, CNRS, Nantes, France

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• Jeanne Got,

  Roles Conceptualization, Data curation, Investigation

  Affiliation IRISA, Univ Rennes, Inria, CNRS, Rennes, France

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• María Paz Cortés,

  Roles Data curation, Investigation, Writing – original draft, Writing – review & editing

  Affiliations Centro de Modelamiento Matemático, Universidad de Chile, Santiago, Chile, Facultad de Ingeniería y Ciencias, Universidad Adolfo Ibáñez, Santiago, Chile, Centro para la Regulación del Genoma (Fondap 15090007), Universidad de Chile, Santiago, Chile

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• Sebastián N. Mendoza,

  Roles Data curation, Investigation, Writing – review & editing

  Affiliations Centro de Modelamiento Matemático, Universidad de Chile, Santiago, Chile, Centro para la Regulación del Genoma (Fondap 15090007), Universidad de Chile, Santiago, Chile

  http://orcid.org/0000-0002-2192-5569

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• Grégory Carrier,

  Roles Investigation, Validation

  Affiliation Laboratoire de Physiologie et de Biotechnologie des Algues, IFREMER, Nantes, France

  http://orcid.org/0000-0001-6859-5707

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• Olivier Dameron,

  Roles Methodology, Software

  Affiliation IRISA, Univ Rennes, Inria, CNRS, Rennes, France

  http://orcid.org/0000-0001-8959-7189

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• Nicolas Guillaudeux,

  Roles Data curation, Investigation, Validation

  Affiliation IRISA, Univ Rennes, Inria, CNRS, Rennes, France

  http://orcid.org/0000-0002-4381-2960

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• Mauricio Latorre,

  Roles Investigation

  Affiliations Centro de Modelamiento Matemático, Universidad de Chile, Santiago, Chile, Centro para la Regulación del Genoma (Fondap 15090007), Universidad de Chile, Santiago, Chile, Instituto de ciencias de la ingeniería, Universidad de O'Higgins, Rancagua, Chile, Instituto de Nutrición y Tecnología de los Alimentos, Universidad de Chile, Santiago, Chile

  http://orcid.org/0000-0003-4746-8690

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• Nicolás Loira,

  Roles Conceptualization, Methodology, Software

  Affiliations Centro de Modelamiento Matemático, Universidad de Chile, Santiago, Chile, Centro para la Regulación del Genoma (Fondap 15090007), Universidad de Chile, Santiago, Chile

  http://orcid.org/0000-0002-3653-2901

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• Gabriel V. Markov,

  Roles Investigation, Writing – review & editing

  Affiliation UMR 8227, Integrative Biology of Marine Models, Station biologique de Roscoff, Sorbonne Université, CNRS, Roscoff, France

  http://orcid.org/0000-0002-8566-7482

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• Alejandro Maass,

  Roles Funding acquisition, Writing – original draft, Writing – review & editing

  Affiliations Centro de Modelamiento Matemático, Universidad de Chile, Santiago, Chile, Centro para la Regulación del Genoma (Fondap 15090007), Universidad de Chile, Santiago, Chile

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• Anne Siegel

  Roles Conceptualization, Funding acquisition, Investigation, Project administration, Supervision, Writing – original draft, Writing – review & editing

  * E-mail: anne.siegel@irisa.fr

  Affiliation IRISA, Univ Rennes, Inria, CNRS, Rennes, France

  http://orcid.org/0000-0001-6542-1568

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