SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data

Ivan Dotu; Scott I. Adamson; Benjamin Coleman; Cyril Fournier; Emma Ricart-Altimiras; Eduardo Eyras; Jeffrey H. Chuang

doi:10.1371/journal.pcbi.1006078

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Open Access

Peer-reviewed

Research Article

SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data

Ivan Dotu ,

Roles Funding acquisition, Software, Supervision, Writing – original draft, Writing – review & editing

¶‡ These authors share first authorship on this work.

Affiliations The Jackson Laboratory for Genomic Medicine, Farmington, CT, United States of America, Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM)–Pompeu Fabra University (UPF), Barcelona, Spain
⨯
Scott I. Adamson ,

Roles Investigation, Writing – original draft, Writing – review & editing

¶‡ These authors share first authorship on this work.

Affiliations The Jackson Laboratory for Genomic Medicine, Farmington, CT, United States of America, UCONN Health, Department of Genetics and Genome Sciences, Farmington, CT, United States of America
⨯
Benjamin Coleman,

Roles Software

Affiliation The Jackson Laboratory for Genomic Medicine, Farmington, CT, United States of America
⨯
Cyril Fournier,

Roles Software

Affiliation The Jackson Laboratory for Genomic Medicine, Farmington, CT, United States of America
⨯
Emma Ricart-Altimiras,

Roles Software

Affiliations The Jackson Laboratory for Genomic Medicine, Farmington, CT, United States of America, Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM)–Pompeu Fabra University (UPF), Barcelona, Spain
⨯
Eduardo Eyras,

Roles Writing – review & editing

Affiliations Research Programme on Biomedical Informatics (GRIB), Hospital del Mar Medical Research Institute (IMIM)–Pompeu Fabra University (UPF), Barcelona, Spain, Catalan Institution for Research and Advanced Studies (ICREA), Barcelona, Spain
⨯
Jeffrey H. Chuang

Roles Funding acquisition, Project administration, Resources, Supervision, Writing – original draft, Writing – review & editing

* E-mail: jeff.chuang@jax.org

Affiliations The Jackson Laboratory for Genomic Medicine, Farmington, CT, United States of America, UCONN Health, Department of Genetics and Genome Sciences, Farmington, CT, United States of America

http://orcid.org/0000-0002-3298-2358

⨯

SARNAclust: Semi-automatic detection of RNA protein binding motifs from immunoprecipitation data

Ivan Dotu,
Scott I. Adamson,
Benjamin Coleman,
Cyril Fournier,
Emma Ricart-Altimiras,
Eduardo Eyras,
Jeffrey H. Chuang

Published: March 29, 2018
https://doi.org/10.1371/journal.pcbi.1006078
See the preprint

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Sequence motif analysis
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RNA-binding proteins
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RNA structure
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Double stranded RNA
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Computational pipelines
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Clustering algorithms
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Immunoprecipitation
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Protein domains
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