Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors

François Serra; Davide Baù; Mike Goodstadt; David Castillo; Guillaume J. Filion; Marc A. Marti-Renom

doi:10.1371/journal.pcbi.1005665

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Open Access

Peer-reviewed

Research Article

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors

François Serra ,

Contributed equally to this work with: François Serra, Davide Baù

Affiliations CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain, Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), Barcelona, Spain, Universitat Pompeu Fabra (UPF), Barcelona, Spain

http://orcid.org/0000-0003-3895-4742

⨯
Davide Baù ,

Contributed equally to this work with: François Serra, Davide Baù

Affiliations CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain, Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), Barcelona, Spain, Universitat Pompeu Fabra (UPF), Barcelona, Spain

http://orcid.org/0000-0002-4177-2838

⨯
Mike Goodstadt,

Affiliations CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain, Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), Barcelona, Spain, Universitat Pompeu Fabra (UPF), Barcelona, Spain

http://orcid.org/0000-0002-0317-1345

⨯
David Castillo,

Affiliations CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain, Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), Barcelona, Spain, Universitat Pompeu Fabra (UPF), Barcelona, Spain
⨯
Guillaume J. Filion,

Affiliations Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), Barcelona, Spain, Universitat Pompeu Fabra (UPF), Barcelona, Spain
⨯
Marc A. Marti-Renom

* E-mail: martirenom@cnag.crg.eu

Affiliations CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), Barcelona, Spain, Gene Regulation, Stem Cells and Cancer Program, Centre for Genomic Regulation (CRG), Barcelona, Spain, Universitat Pompeu Fabra (UPF), Barcelona, Spain, ICREA, Barcelona, Spain

http://orcid.org/0000-0002-0151-4279

⨯

Automatic analysis and 3D-modelling of Hi-C data using TADbit reveals structural features of the fly chromatin colors

François Serra,
Davide Baù,
Mike Goodstadt,
David Castillo,
Guillaume J. Filion,
Marc A. Marti-Renom

Published: July 19, 2017
https://doi.org/10.1371/journal.pcbi.1005665

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Chromatin
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Invertebrate genomics
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Drosophila melanogaster
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Chromosome mapping
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