FastGGM: An Efficient Algorithm for the Inference of Gaussian Graphical Model in Biological Networks

Ting Wang; Zhao Ren; Ying Ding; Zhou Fang; Zhe Sun; Matthew L. MacDonald; Robert A. Sweet; Jieru Wang; Wei Chen

doi:10.1371/journal.pcbi.1004755

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Peer-reviewed

Research Article

FastGGM: An Efficient Algorithm for the Inference of Gaussian Graphical Model in Biological Networks

Ting Wang ,

Contributed equally to this work with: Ting Wang, Zhao Ren

Affiliation Division of Pulmonary Medicine, Allergy and Immunology; Department of Pediatrics, Children’s Hospital of Pittsburgh of UPMC, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
⨯
Zhao Ren ,

Contributed equally to this work with: Ting Wang, Zhao Ren

Affiliation Department of Statistics, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
⨯
Ying Ding,

Affiliation Department of Biostatistics, University of Pittsburgh Graduate School of Public Health, Pittsburgh, Pennsylvania, United States of America
⨯
Zhou Fang,

Affiliation Department of Biostatistics, University of Pittsburgh Graduate School of Public Health, Pittsburgh, Pennsylvania, United States of America
⨯
Zhe Sun,

Affiliation Department of Biostatistics, University of Pittsburgh Graduate School of Public Health, Pittsburgh, Pennsylvania, United States of America
⨯
Matthew L. MacDonald,

Affiliation Department of Psychiatry, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
⨯
Robert A. Sweet,

Affiliations Department of Psychiatry, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America, Department of Neurology, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America, VISN 4 Mental Illness Research, Education and Clinical Center (MIRECC), VA Pittsburgh Healthcare System, Pittsburgh, Pennsylvania, United States of America
⨯
Jieru Wang,

Affiliation Division of Pulmonary Medicine, Allergy and Immunology; Department of Pediatrics, Children’s Hospital of Pittsburgh of UPMC, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America
⨯
Wei Chen

* E-mail: wei.chen@chp.edu

Affiliations Division of Pulmonary Medicine, Allergy and Immunology; Department of Pediatrics, Children’s Hospital of Pittsburgh of UPMC, University of Pittsburgh, Pittsburgh, Pennsylvania, United States of America, Department of Biostatistics, University of Pittsburgh Graduate School of Public Health, Pittsburgh, Pennsylvania, United States of America, Department of Human Genetics, University of Pittsburgh Graduate School of Public Health, Pittsburgh, Pennsylvania, United States of America
⨯

FastGGM: An Efficient Algorithm for the Inference of Gaussian Graphical Model in Biological Networks

Ting Wang,
Zhao Ren,
Ying Ding,
Zhou Fang,
Zhe Sun,
Matthew L. MacDonald,
Robert A. Sweet,
Jieru Wang,
Wei Chen

Published: February 12, 2016
https://doi.org/10.1371/journal.pcbi.1004755

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