Epidemic Reconstruction in a Phylogenetics Framework: Transmission Trees as Partitions of the Node Set

Open Access

Peer-reviewed

Research Article

Matthew Hall ,

* E-mail: m.d.hall@sms.ed.ac.uk

Affiliations Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom, Centre for Immunity, Infection and Evolution, University of Edinburgh, Edinburgh, United Kingdom
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Mark Woolhouse,

Affiliations Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom, Centre for Immunity, Infection and Evolution, University of Edinburgh, Edinburgh, United Kingdom
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Andrew Rambaut

Affiliations Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, United Kingdom, Centre for Immunity, Infection and Evolution, University of Edinburgh, Edinburgh, United Kingdom, Fogarty International Center, National Institutes of Health, Bethesda, Maryland, United States of America
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Phylogenetic analysis
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Phylogenetics
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Farms
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Genetic epidemiology
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Pathogens
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Animal phylogenetics
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Probability distribution
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Epidemiology
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