An HMM-Based Comparative Genomic Framework for Detecting Introgression in Eukaryotes

Open Access

Peer-reviewed

Research Article

Kevin J. Liu ,

* E-mail: kl23@rice.edu (KJL); nakhleh@rice.edu (LN)

Affiliations Department of Computer Science, Rice University, Houston, Texas, United States of America, Department of Ecology and Evolutionary Biology, Rice University, Houston, Texas, United States of America
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Jingxuan Dai,

Affiliation Department of Computer Science, Rice University, Houston, Texas, United States of America
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Kathy Truong,

Affiliation Department of Computer Science, Rice University, Houston, Texas, United States of America
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Ying Song,

Affiliation The State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
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Michael H. Kohn,

Affiliation Department of Ecology and Evolutionary Biology, Rice University, Houston, Texas, United States of America
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Luay Nakhleh

* E-mail: kl23@rice.edu (KJL); nakhleh@rice.edu (LN)

Affiliations Department of Computer Science, Rice University, Houston, Texas, United States of America, Department of Ecology and Evolutionary Biology, Rice University, Houston, Texas, United States of America
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Introgression
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Mammalian genomics
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Phylogenetic analysis
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Hidden Markov models
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Genomics
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Animal phylogenetics
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Hybridization
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Simulation and modeling
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