Fast Pairwise Structural RNA Alignments by Pruning of the Dynamical Programming Matrix

Open Access

Peer-reviewed

Research Article

Jakob H Havgaard,

Affiliation Division of Genetics and Bioinformatics, University of Copenhagen, Frederiksberg, Denmark
⨯
Elfar Torarinsson,

Affiliations Division of Genetics and Bioinformatics, University of Copenhagen, Frederiksberg, Denmark , Department of Natural Sciences, University of Copenhagen, Frederiksberg, Denmark
⨯
Jan Gorodkin

*To whom correspondence should be addressed. E-mail: gorodkin@genome.ku.dk

Affiliation Division of Genetics and Bioinformatics, University of Copenhagen, Frederiksberg, Denmark
⨯

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Sequence alignment
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RNA structure
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Nucleotides
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RNA alignment
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Nucleotide sequencing
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Transfer RNA
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Multiple alignment calculation
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RNA folding
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