The role of chromatin state in intron retention: A case study in leveraging large scale deep learning models

Ahmed Daoud; Asa Ben-Hur

doi:10.1371/journal.pcbi.1012755

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Open Access

Peer-reviewed

Research Article

The role of chromatin state in intron retention: A case study in leveraging large scale deep learning models

Ahmed Daoud,

Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft

Affiliation Department of Computer Science, Colorado State University, Fort Collins, Colorado, United States of America
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Asa Ben-Hur

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – review & editing

* E-mail: asa@colostate.edu

Affiliation Department of Computer Science, Colorado State University, Fort Collins, Colorado, United States of America

https://orcid.org/0000-0001-8269-6942

⨯

The role of chromatin state in intron retention: A case study in leveraging large scale deep learning models

Ahmed Daoud,
Asa Ben-Hur

Published: January 10, 2025
https://doi.org/10.1371/journal.pcbi.1012755

About the Authors

Ahmed Daoud

Roles Conceptualization, Formal analysis, Investigation, Methodology, Software, Visualization, Writing – original draft

Affiliation Department of Computer Science, Colorado State University, Fort Collins, Colorado, United States of America

Asa Ben-Hur

Roles Conceptualization, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Supervision, Writing – review & editing

* E-mail: asa@colostate.edu

Affiliation Department of Computer Science, Colorado State University, Fort Collins, Colorado, United States of America

https://orcid.org/0000-0001-8269-6942

Competing Interests

The authors have declared that no competing interests exist.

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Chromatin
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Introns
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Transcription factors
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Deep learning
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Language
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DNA-binding proteins
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Alternative splicing
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Histones
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