Improving deep models of protein-coding potential with a Fourier-transform architecture and machine translation task

Joseph D. Valencia; David A. Hendrix

doi:10.1371/journal.pcbi.1011526

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Open Access

Peer-reviewed

Research Article

Improving deep models of protein-coding potential with a Fourier-transform architecture and machine translation task

Joseph D. Valencia,

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, Oregon, United States of America

https://orcid.org/0000-0001-9199-5573

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David A. Hendrix

Roles Conceptualization, Formal analysis, Funding acquisition, Resources, Supervision, Writing – review & editing

* E-mail: david.hendrix@oregonstate.edu

Affiliations School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, Oregon, United States of America, Department of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon, United States of America

https://orcid.org/0000-0002-7285-1977

⨯

Improving deep models of protein-coding potential with a Fourier-transform architecture and machine translation task

Joseph D. Valencia,
David A. Hendrix

Published: October 12, 2023
https://doi.org/10.1371/journal.pcbi.1011526

About the Authors

Joseph D. Valencia

Roles Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, Oregon, United States of America

https://orcid.org/0000-0001-9199-5573

David A. Hendrix

Roles Conceptualization, Formal analysis, Funding acquisition, Resources, Supervision, Writing – review & editing

* E-mail: david.hendrix@oregonstate.edu

Affiliations School of Electrical Engineering and Computer Science, Oregon State University, Corvallis, Oregon, United States of America, Department of Biochemistry and Biophysics, Oregon State University, Corvallis, Oregon, United States of America

https://orcid.org/0000-0002-7285-1977

Competing Interests

The authors have declared that no competing interests exist.

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Messenger RNA
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Long non-coding RNA
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Machine learning
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Protein translation
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Nonsense mutation
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Sequence motif analysis
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Nucleotides
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Point mutation
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