CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure

Raquel Linheiro; John Archer

doi:10.1371/journal.pcbi.1009631

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Open Access

Peer-reviewed

Research Article

CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure

Raquel Linheiro,

Roles Data curation, Formal analysis, Investigation, Validation, Visualization, Writing – review & editing

Affiliation CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal
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John Archer

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: john.archer@cibio.up.pt

Affiliation CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal

https://orcid.org/0000-0001-6212-0962

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CStone: A de novo transcriptome assembler for short-read data that identifies non-chimeric contigs based on underlying graph structure

Raquel Linheiro,
John Archer

Published: November 23, 2021
https://doi.org/10.1371/journal.pcbi.1009631

About the Authors

Raquel Linheiro

Roles Data curation, Formal analysis, Investigation, Validation, Visualization, Writing – review & editing

Affiliation CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal

John Archer

Roles Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: john.archer@cibio.up.pt

Affiliation CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, Vairão, Portugal

https://orcid.org/0000-0001-6212-0962

Competing Interests

The authors have declared that no competing interests exist.

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Transcriptome analysis
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Gene expression
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Genomics
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Canaries
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Drosophila melanogaster
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Leopards
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Simulation and modeling
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Sequence alignment
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