Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences

Ilya Plyusnin; Liisa Holm; Petri Törönen

doi:10.1371/journal.pcbi.1007419

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Open Access

Peer-reviewed

Research Article

Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences

Ilya Plyusnin,

Roles Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Institute of Biotechnology, Helsinki Institute of Life Sciences, University of Helsinki, Helsinki, Finland
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Liisa Holm,

Roles Funding acquisition, Project administration, Writing – review & editing

Affiliations Institute of Biotechnology, Helsinki Institute of Life Sciences, University of Helsinki, Helsinki, Finland, Research Programme in Organismal and Evolutionary Biology, Faculty of Biosciences, University of Helsinki, Helsinki, Finland
⨯
Petri Törönen

Roles Conceptualization, Investigation, Methodology, Project administration, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: petri.toronen@helsinki.fi

Affiliation Institute of Biotechnology, Helsinki Institute of Life Sciences, University of Helsinki, Helsinki, Finland

http://orcid.org/0000-0003-4764-9790

⨯

Novel comparison of evaluation metrics for gene ontology classifiers reveals drastic performance differences

Ilya Plyusnin,
Liisa Holm,
Petri Törönen

Published: November 4, 2019
https://doi.org/10.1371/journal.pcbi.1007419
See the preprint

About the Authors

Ilya Plyusnin

Roles Data curation, Formal analysis, Methodology, Software, Validation, Visualization, Writing – original draft, Writing – review & editing

Affiliation Institute of Biotechnology, Helsinki Institute of Life Sciences, University of Helsinki, Helsinki, Finland

Liisa Holm

Roles Funding acquisition, Project administration, Writing – review & editing

Affiliations Institute of Biotechnology, Helsinki Institute of Life Sciences, University of Helsinki, Helsinki, Finland, Research Programme in Organismal and Evolutionary Biology, Faculty of Biosciences, University of Helsinki, Helsinki, Finland

Petri Törönen

Roles Conceptualization, Investigation, Methodology, Project administration, Software, Supervision, Validation, Visualization, Writing – original draft, Writing – review & editing

* E-mail: petri.toronen@helsinki.fi

Affiliation Institute of Biotechnology, Helsinki Institute of Life Sciences, University of Helsinki, Helsinki, Finland

http://orcid.org/0000-0003-4764-9790

Competing Interests

The authors have declared that no competing interests exist.

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Animal performance
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Gene ontologies
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Permutation
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Statistical distributions
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Bioinformatics
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Forecasting
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Machine learning
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Speech signal processing
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