Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching

Martin Raden; Mostafa Mahmoud Mohamed; Syed Mohsin Ali; Rolf Backofen

doi:10.1371/journal.pcbi.1006341

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Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching

Martin Raden ,

* E-mail: mmann@informatik.uni-freiburg.de

Affiliations Chair of Forest Growth and Dendroecology, University of Freiburg, Freiburg, Germany, Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany

http://orcid.org/0000-0002-7926-5911

⨯
Mostafa Mahmoud Mohamed,

Affiliation Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany
⨯
Syed Mohsin Ali,

Affiliation Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany
⨯
Rolf Backofen

Affiliations Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany, Center for Biological Signaling Studies, University of Freiburg, Freiburg, Germany, Center for Biological Systems Analysis, University of Freiburg, Freiburg, Germany
⨯

Interactive implementations of thermodynamics-based RNA structure and RNA–RNA interaction prediction approaches for example-driven teaching

Martin Raden,
Mostafa Mahmoud Mohamed,
Syed Mohsin Ali,
Rolf Backofen

Published: August 30, 2018
https://doi.org/10.1371/journal.pcbi.1006341

About the Authors

Martin Raden

* E-mail: mmann@informatik.uni-freiburg.de

Affiliations Chair of Forest Growth and Dendroecology, University of Freiburg, Freiburg, Germany, Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany

http://orcid.org/0000-0002-7926-5911

Mostafa Mahmoud Mohamed

Affiliation Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany

Syed Mohsin Ali

Affiliation Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany

Rolf Backofen

Affiliations Bioinformatics Group, Department of Computer Science, University of Freiburg, Freiburg, Germany, Center for Biological Signaling Studies, University of Freiburg, Freiburg, Germany, Center for Biological Systems Analysis, University of Freiburg, Freiburg, Germany

Competing Interests

The authors have declared that no competing interests exist.

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RNA structure
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Web-based applications
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Free energy
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Algorithms
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RNA sequences
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Nucleotides
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RNA structure prediction
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RNA hybridization
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