Improving pairwise comparison of protein sequences with domain co-occurrence

Christophe Menichelli; Olivier Gascuel; Laurent Bréhélin

doi:10.1371/journal.pcbi.1005889

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Open Access

Peer-reviewed

Research Article

Improving pairwise comparison of protein sequences with domain co-occurrence

Christophe Menichelli,

Roles Methodology, Software, Writing – original draft

Affiliation IBC, LIRMM, Univ. Montpellier, CNRS, Montpellier, France

http://orcid.org/0000-0001-9161-3715

⨯
Olivier Gascuel,

Roles Conceptualization, Funding acquisition, Writing – review & editing

Affiliations IBC, LIRMM, Univ. Montpellier, CNRS, Montpellier, France, Unité de Bioinformatique Evolutive, C3BI - USR 3756, Institut Pasteur et CNRS, Paris, France
⨯
Laurent Bréhélin

Roles Conceptualization, Funding acquisition, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

* E-mail: brehelin@lirmm.fr

Affiliation IBC, LIRMM, Univ. Montpellier, CNRS, Montpellier, France

http://orcid.org/0000-0002-2582-2831

⨯

Improving pairwise comparison of protein sequences with domain co-occurrence

Christophe Menichelli,
Olivier Gascuel,
Laurent Bréhélin

Published: January 2, 2018
https://doi.org/10.1371/journal.pcbi.1005889
See the preprint

About the Authors

Christophe Menichelli

Roles Methodology, Software, Writing – original draft

Affiliation IBC, LIRMM, Univ. Montpellier, CNRS, Montpellier, France

http://orcid.org/0000-0001-9161-3715

Olivier Gascuel

Roles Conceptualization, Funding acquisition, Writing – review & editing

Affiliations IBC, LIRMM, Univ. Montpellier, CNRS, Montpellier, France, Unité de Bioinformatique Evolutive, C3BI - USR 3756, Institut Pasteur et CNRS, Paris, France

Laurent Bréhélin

Roles Conceptualization, Funding acquisition, Methodology, Project administration, Supervision, Writing – original draft, Writing – review & editing

* E-mail: brehelin@lirmm.fr

Affiliation IBC, LIRMM, Univ. Montpellier, CNRS, Montpellier, France

http://orcid.org/0000-0002-2582-2831

Competing Interests

The authors have declared that no competing interests exist.

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Protein domains
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BLAST algorithm
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Hidden Markov models
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Plasmodium
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Sequence alignment
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Multiple alignment calculation
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Proteomes
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Entropy
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