eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models

Michal Brylinski

doi:10.1371/journal.pcbi.1003829

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Open Access

Peer-reviewed

Research Article

eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models

Michal Brylinski

* E-mail: michal@brylinski.org

Affiliations Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America, Center for Computation & Technology, Louisiana State University, Baton Rouge, Louisiana, United States of America
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eMatchSite: Sequence Order-Independent Structure Alignments of Ligand Binding Pockets in Protein Models

Michal Brylinski

Published: September 18, 2014
https://doi.org/10.1371/journal.pcbi.1003829

About the Authors

Michal Brylinski

* E-mail: michal@brylinski.org

Affiliations Department of Biological Sciences, Louisiana State University, Baton Rouge, Louisiana, United States of America, Center for Computation & Technology, Louisiana State University, Baton Rouge, Louisiana, United States of America

Competing Interests

The authors have declared that no competing interests exist.

Author Contributions

Conceived and designed the experiments: MB. Performed the experiments: MB. Analyzed the data: MB. Contributed reagents/materials/analysis tools: MB. Contributed to the writing of the manuscript: MB.

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Protein structure comparison
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Crystal structure
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Sequence alignment
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Protein structure
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Protein structure prediction
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Machine learning algorithms
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Algorithms
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DNA-binding proteins
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