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Viral genes

Clinical validation of RCSMS: A rapid and sensitive CRISPR-Cas12a test for the molecular detection of SARS-CoV-2 from saliva

Joaquín Abugattas-Núñez del Prado, Angélica Quintana Reyes, Julio Leon, Juan Blume La Torre, Renzo Gutiérrez Loli, Alejandro Pinzón Olejua, Elena Rocío Chamorro Chirinos, Félix Antonio Loza Mauricio, Jorge L. Maguiña, Piere Rodriguez-Aliaga, Edward Málaga-Trillo

published 25 Mar 2024

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Detection of lymphoproliferative disease virus in Iowa Wild Turkeys (Meleagris gallopavo): Comparison of two sections of the proviral genome

Kelsey C. Smith, Julie A. Blanchong

published 12 Feb 2024

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High throughput SARS-CoV-2 variant analysis using molecular barcodes coupled with next generation sequencing

Lyora A. Cohen-Aharonov, Annie Rebibo-Sabbah, Adar Yaacov, Roy Z. Granit, Merav Strauss, Raul Colodner, Ori Cheshin, Shai Rosenberg, Ronen Eavri

published 21 Jun 2022

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Pooling saliva samples as an excellent option to increase the surveillance for SARS-CoV-2 when re-opening community settings

Joaquín Moreno-Contreras, Marco A. Espinoza, Carlos Sandoval-Jaime, Marco A. Cantú-Cuevas, Daniel A. Madrid-González, Héctor Barón-Olivares, Oscar D. Ortiz-Orozco, Asunción V. Muñoz-Rangel, Cecilia Guzmán-Rodríguez, Manuel Hernández-de la Cruz, César M. Eroza-Osorio, Carlos F. Arias, Susana López

published 25 Jan 2022

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LuNER: Multiplexed SARS-CoV-2 detection in clinical swab and wastewater samples

Elizabeth C. Stahl, Allan R. Gopez, Connor A. Tsuchida, Vinson B. Fan, Erica A. Moehle, Lea B. Witkowsky, Jennifer R. Hamilton, Enrique Lin-Shiao, Matthew McElroy, Shana L. McDevitt, Alison Ciling, C. Kimberly Tsui, Kathleen Pestal, Holly K. Gildea, Amanda Keller, Iman A. Sylvain, Clara Williams, Ariana Hirsh, Alexander J. Ehrenberg, Rose Kantor, Matthew Metzger, Kara L. Nelson, Fyodor D. Urnov, Bradley R. Ringeisen, Petros Giannikopoulos, Jennifer A. Doudna, IGI Testing Consortium

published 10 Nov 2021

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HIV-1 Gag gene mutations, treatment response and drug resistance to protease inhibitors: A systematic review and meta-analysis protocol

Alex Durand Nka, Georges Teto, Maria Mercedes Santoro, Valantine Ngum Ndze, Désiré Takou, Beatrice Dambaya, Ezechiel Ngoufack Jagni Semengue, Lavinia Fabeni, Carlo-Federico Perno, Vittorio Colizzi, Francesca Ceccherini-Silberstein, Joseph Fokam

published 01 Jul 2021

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Pool testing on random and natural clusters of individuals: Optimisation of SARS-CoV-2 surveillance in the presence of low viral load samples

Michela Baccini, Emilia Rocco, Irene Paganini, Alessandra Mattei, Cristina Sani, Giulia Vannucci, Simonetta Bisanzi, Elena Burroni, Marco Peluso, Armelle Munnia, Filippo Cellai, Giampaolo Pompeo, Laura Micio, Jessica Viti, Fabrizia Mealli, Francesca Maria Carozzi

published 18 May 2021

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Development of multiplex real-time RT-PCR assay for the detection of SARS-CoV-2

Huseyin Tombuloglu, Hussein Sabit, Ebtesam Al-Suhaimi, Reem Al Jindan, Khaled R. Alkharsah

published 29 Apr 2021

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Extraction-free protocol combining proteinase K and heat inactivation for detection of SARS-CoV-2 by RT-qPCR

Valeria Genoud, Martin Stortz, Ariel Waisman, Bruno G. Berardino, Paula Verneri, Virginia Dansey, Melina Salvatori, Federico Remes Lenicov, Valeria Levi

published 26 Feb 2021

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A new approach for Small Ruminant Lentivirus full genome characterization revealed the circulation of divergent strains

Barbara Colitti, Elisabetta Coradduzza, Giantonella Puggioni, Maria Teresa Capucchio, Ramsés Reina, Luigi Bertolotti, Sergio Rosati

published 21 Feb 2019

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High throughput generation and characterization of replication-competent clade C transmitter-founder simian human immunodeficiency viruses

Debashis Dutta, Samuel Johnson, Alisha Dalal, Martin J. Deymier, Eric Hunter, Siddappa N. Byrareddy

published 14 May 2018

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Epidemiological survey in single-species flocks from Poland reveals expanded genetic and antigenic diversity of small ruminant lentiviruses

Monika Olech, Stephen Valas, Jacek Kuźmak

published 05 Mar 2018

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Deep sequencing of near full-length HIV-1 genomes from plasma identifies circulating subtype C and infrequent occurrence of AC recombinant form in Southern India

Shuba Varshini Alampalli, Michael M. Thomson, Raghavan Sampathkumar, Karthi Sivaraman, Anto Jesuraj U. K. J., Chirag Dhar, George D. Souza, Neil Berry, Annapurna Vyakarnam

published 08 Dec 2017

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