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Viral gene expression

Characterizing temporal and global host innate immune responses against SARS-CoV-1 and -2 infection in pathologically relevant human lung epithelial cells

Vivian Y. Tat, Aleksandra K. Drelich, Pinghan Huang, Kamil Khanipov, Jason C. Hsu, Steven G. Widen, Chien-Te Kent Tseng, George Golovko

published 28 Jan 2025

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Longitudinal host transcriptional responses to SARS-CoV-2 infection in adults with extremely high viral load

Vasanthi Avadhanula, Chad J. Creighton, Laura Ferlic-Stark, Divya Nagaraj, Yiqun Zhang, Richard Sucgang, Erin G. Nicholson, Anubama Rajan, Vipin Kumar Menon, Harshavardhan Doddapaneni, Donna Marie Muzny, Ginger A. Metcalf, Sara Joan Javornik Cregeen, Kristi Louise Hoffman, Richard A. Gibbs, Joseph F. Petrosino, Pedro A. Piedra

published 16 Jan 2025

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miRNA-328-3p regulates ZO-1 expression and inhibits PEDV proliferation via the PLC-β1-PKC pathway

Han Zhao, Jiayu Zhang, Dengliang Li, Zhanding Cui, Jiuyuan Liu, Di Bao, Yiming Wei, Xinyue Zhang, Zhimin Wu, Tianqi Zhang, Kai Wang, Shushuai Yi, Wei Lian, Guixue Hu

published 03 Jan 2025

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Exploring the host response in infected lung organoids using NanoString technology: A statistical analysis of gene expression data

Mostafa Rezapour, Stephen J. Walker, David A. Ornelles, Muhammad Khalid Khan Niazi, Patrick M. McNutt, Anthony Atala, Metin Nafi Gurcan

published 26 Nov 2024

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Increased QPCT gene expression by the hepatitis B virus promotes HBV replication

Conghui Zhang, Qingfeng Ma, Wei Wang, Hui Song, Xue Wang, Fengxia Xu, Chengliang Zhu, Xinghui Liu

published 12 Nov 2024

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Tracking inflammation resolution signatures in lungs after SARS-CoV-2 omicron BA.1 infection of K18-hACE2 mice

Agnes Carolin, Kexin Yan, Cameron R. Bishop, Bing Tang, Wilson Nguyen, Daniel J. Rawle, Andreas Suhrbier

published 12 Nov 2024

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Transcriptomic analyses of host-virus interactions during in vitro infection with wild-type and glycoprotein g-deficient (ΔgG) strains of ILTV in primary and continuous cell cultures

Gayathri Gopakumar, Andrés Diaz-Méndez, Mauricio J. C. Coppo, Carol A. Hartley, Joanne M. Devlin

published 11 Oct 2024

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RNA editing regulates host immune response and T cell homeostasis in SARS-CoV-2 infection

Molly Huang, Adam Mark, Jessica Pham, Karina Vera, Amanda M. Saravia-Butler, Afshin Beheshti, Qingfei Jiang, Kathleen M. Fisch

published 23 Aug 2024

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USP26 suppresses type I interferon signaling by targeting TRAF3 for deubiquitination

Cheng-Lan Sheng, Bang-Dong Jiang, Chun-Qiu Zhang, Jin-Hua Huang, Zi Wang, Chao Xu

published 26 Jul 2024

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A cell competition system with one gene expression from a single-copy gene in one cell

Yoshinori Hasegawa, Megumi Nakano, Tsutomu Hosouchi, Takashi Watanabe, Izumi Yamaguchi, Manabu Nakayama, Osamu Ohara

published 05 Jul 2024

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Transcriptome analysis of Burkitt lymphoma cells treated with anti-convulsant drugs that are inhibitors of Epstein–Barr virus lytic reactivation

Kelly L. Gorres, David M. Reineke, George Miller

published 18 Apr 2024

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The impact of ZIKV infection on gene expression in neural cells over time

Moreno Magalhães de Souza Rodrigues, Antonio Marques Pereira Júnior, Eduardo Rocha Fukutani, Keityane Boone Bergamaschi, Mariana Araújo-Pereira, Vanessa Riesz Salgado, Artur Trancoso Lopo de Queiroz

published 21 Mar 2024

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A fluorescence viewer for rapid molecular assay readout in space and low-resource terrestrial environments

Kristoff Misquitta, Bess M. Miller, Kathryn Malecek, Emily Gleason, Kathryn Martin, Chad M. Walesky, Kevin Foley, D. Scott Copeland, Ezequiel Alvarez Saavedra, Sebastian Kraves

published 15 Mar 2024

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