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Viral evolution

Numerical investigation of a reaction-diffusion model used for rumor spreading in a ‘street’

Feiyun Pei, Yamin Du

published 20 Feb 2026

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Genetic diversity of alpha and betacoronaviruses in cave and temple-roosting bats in Vientiane Province, Lao PDR

Illich Manfred Mombo, Novy Charel Bobouaka Bonguili, Nicola Gasperini, Arisa Chandarak, Thida Xaiyaphoumi, Pauline Brault, Oceane Rieu, Phimpha Paboriboune, Eric Leroy, Fabien Roch Niama, Sabrina Locatelli

published 30 Jan 2026

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Molecular characterization and phylogenetic analysis of major envelope protein gene (B2L) and ATPase protein gene (A32L) of orf virus isolates from goats in Southern, Thailand

Wongkae Watjiranon, Chya Vannakovida, Thanidtha Te-Chaniyom, Natakorn Nokchan, Syriam Sooksawasdi Na Ayudhya

published 30 Jan 2026

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Diversity, recombination and misclassification in the family Geminiviridae: Insight from bioinformatics analysis

Moshood Olamide Lateef, Dauda Nathaniel, Bolaji Osundahunsi, Neil Arvin Bretana

published 02 Jan 2026

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Investigating the evolutionary dynamics and mutational pattern of SARS-CoV-2 spike gene on selected SARS-CoV-2 variants

Bachir Balech, Alessandra Lo Presti, Claudia Telegrafo, Lucia Maisto, Emanuela Giombini, Angela Di Martino, Luigina Ambrosio, Apollonia Tullo, Paola Stefanelli, on behalf of the Italian Genomic Laboratory Network

published 21 Oct 2025

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SARS-CoV-2 sequencing artifacts associated with targeted PCR enrichment and read mapping

Kirsten Maren Ellegaard, Vithiagaran Gunalan, Raphael Sieber, Sharmin Jamshid Baig, Nicolai Balle Larsen, Marc Bennedbæk, Jonas Bybjerg-Grauholm, Leandro Andrés Escobar-Herrera, Tobias Gress, Theis Hass Thorsen, Anders Krusager, Gitte Nygaard Aasbjerg, Nour Saad Al-Tamimi, Casper Westergaard, Christina Wiid Svarrer, Morten Rasmussen, Marc Stegger

published 16 Oct 2025

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Identification and genetic characterization of Jingmen tick virus from ticks sampled in select regions of Kenya; 2022–2024

Lydia Mwasi, Samoel Khamadi, Wallace Bulimo, Johnson Kinyua, Santos Yalwala, Luis Pow Sang, Haynes Robert, Gerald G. Kellar, John Eads, Fredrick Eyase

published 13 Oct 2025

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Passage of human-origin influenza A virus in swine tracheal epithelial cells selects for adaptive mutations in the hemagglutinin gene

Jongsuk Mo, Lucas M. Ferreri, Ginger Geiger, Daniel R. Perez, Daniela S. Rajao

published 13 Aug 2025

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Deciphering the genetic landscape of tomato leaf curl New Delhi virus: Dynamic and region-specific diversity revealed by comprehensive sequence analyses

Zafar Iqbal, Adil Alshoaibi, Sallah Ahmad Al Hashedi, Muhammad Naeem Sattar, Khaled Muhammad Amin Ramadan

published 17 Jul 2025

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Variant evolution graph: Can we infer how SARS-CoV-2 variants are evolving?

Badhan Das, Lenwood S. Heath

published 09 Jun 2025

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Whole genome sequencing and molecular detection of potato virus X in Bangladesh

Md. Shafiqul Islam, Md. Akash Ahammed, Fahmida Akhter, Mosaddiqur Rahman, Md. Mosharraf Hossain Molla

published 08 May 2025

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Transmission matrix parameter estimation of COVID-19 evolution with age compartments using ensemble-based data assimilation

Santiago Rosa, Manuel A. Pulido, Juan J. Ruiz, Tadeo J. Cocucci

published 28 Apr 2025

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Increased preference for lysine over arginine in spike proteins of SARS-CoV-2 BA.2.86 variant and its daughter lineages

Anže Božič, Rudolf Podgornik

published 07 Apr 2025

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