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Viral evolution

An Experimental and Computational Evolution-Based Method to Study a Mode of Co-evolution of Overlapping Open Reading Frames in the AAV2 Viral Genome

Yasuhiro Kawano, Shane Neeley, Kei Adachi, Hiroyuki Nakai

Emergence and Phylodynamics of Citrus tristeza virus in Sicily, Italy

Salvatore Davino, Anouk Willemsen, [ ... ], Luis Rubio

The Evolutionary Rates of HCV Estimated with Subtype 1a and 1b Sequences over the ORF Length and in Different Genomic Regions

Manqiong Yuan, Teng Lu, Chunhua Li, Ling Lu

Molecular Epidemiology and Phylodynamics of the Human Respiratory Syncytial Virus Fusion Protein in Northern Taiwan

Hsin Chi, Hsin-Fu Liu, [ ... ], Li-Min Huang

Model-Selection-Based Approach for Calculating Cellular Multiplicity of Infection during Virus Colonization of Multi-Cellular Hosts

Mark P. Zwart, Nicolas Tromas, Santiago F. Elena

Dengue Virus Type 3 Adaptive Changes during Epidemics in São Jose de Rio Preto, Brazil, 2006–2007

Christian Julian Villabona-Arenas, Adriano Mondini, [ ... ], Maurício L. Nogueira

Acute Phase CD8+ T Lymphocytes against Alternate Reading Frame Epitopes Select for Rapid Viral Escape during SIV Infection

Andrew D. Walsh, Benjamin N. Bimber, [ ... ], Nicholas J. Maness

Novel Phylogenetic Algorithm to Monitor Human Tropism in Egyptian H5N1-HPAIV Reveals Evolution toward Efficient Human-to-Human Transmission

Vladimir R. Perovic, Claude P. Muller, [ ... ], Veljko Veljkovic

On Hepatitis C Virus Evolution: The Interaction between Virus and Host towards Treatment Outcome

Cíntia Bittar, Ana Carolina Gomes Jardim, [ ... ], Paula Rahal

In Vitro HIV-1 Evolution in Response to Triple Reverse Transcriptase Inhibitors & In Silico Phenotypic Analysis

Barbara A. Rath, Kaveh Pouran Yousef, [ ... ], Thomas C. Merigan

Exploring the Molecular Epidemiology and Evolutionary Dynamics of Influenza A Virus in Taiwan

Jih-Hui Lin, Shu-Chun Chiu, [ ... ], Hsin-Fu Liu

Mean Protein Evolutionary Distance: A Method for Comparative Protein Evolution and Its Application

Michael J. Wise

Epidemiology and Evolution of Rotaviruses and Noroviruses from an Archival WHO Global Study in Children (1976–79) with Implications for Vaccine Design

Lauren A. Rackoff, Karin Bok, Kim Y. Green, Albert Z. Kapikian

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