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Viral evolution

Synonymous Codon Usage in TTSuV2: Analysis and Comparison with TTSuV1

Zhicheng Zhang, Wei Dai, Dingzhen Dai

Extreme Evolutionary Conservation of Functionally Important Regions in H1N1 Influenza Proteome

Samantha Warren, Xiu-Feng Wan, Gavin Conant, Dmitry Korkin

Identification of a Cluster of HIV-1 Controllers Infected with Low Replicating Viruses

Concepción Casado, Maria Pernas, [ ... ], Cecilio López-Galíndez

Variation of Transaminases, HCV-RNA Levels and Th1/Th2 Cytokine Production during the Post-Partum Period in Pregnant Women with Chronic Hepatitis C

Ángeles Ruiz-Extremera, José Antonio Muñoz-Gámez, [ ... ], Javier Salmerón

Structural Differences between the Avian and Human H7N9 Hemagglutinin Proteins Are Attributable to Modifications in Salt Bridge Formation: A Computational Study with Implications in Viral Evolution

Marni E. Cueno, Kenichi Imai, Muneaki Tamura, Kuniyasu Ochiai

Quantifying the Fitness Advantage of Polymerase Substitutions in Influenza A/H7N9 Viruses during Adaptation to Humans

Judith M. Fonville, David F. Burke, [ ... ], Colin A. Russell

Multiple Genomic Recombination Events in the Evolution of Saffold Cardiovirus

Lili Ren, Yan Xiao, [ ... ], Jianwei Wang

Application of Motif-Based Tools on Evolutionary Analysis of Multipartite Single-Stranded DNA Viruses

Hsiang-Iu Wang, Chih-Hung Chang, [ ... ], Hsin-Hung Yeh

Comprehensive Phylogenetic Reconstructions of African Swine Fever Virus: Proposal for a New Classification and Molecular Dating of the Virus

Vincent Michaud, Tantely Randriamparany, Emmanuel Albina

Evolutionary Invasion and Escape in the Presence of Deleterious Mutations

Claude Loverdo, James O. Lloyd-Smith

Bioinformatics of Recent Aqua- and Orthoreovirus Isolates from Fish: Evolutionary Gain or Loss of FAST and Fiber Proteins and Taxonomic Implications

Max L. Nibert, Roy Duncan

HIV-1 Clade B pol Evolution following Primary Infection

George K. Hightower, Susanne J. May, [ ... ], Sergei L. Kosakovsky Pond

Evolution of Type 2 Vaccine Derived Poliovirus Lineages. Evidence for Codon-Specific Positive Selection at Three Distinct Locations on Capsid Wall

Tapani Hovi, Carita Savolainen-Kopra, [ ... ], Merja Roivainen

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