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Viral evolution

Comprehensive Phylogenetic Reconstructions of African Swine Fever Virus: Proposal for a New Classification and Molecular Dating of the Virus

Vincent Michaud, Tantely Randriamparany, Emmanuel Albina

Evolutionary Invasion and Escape in the Presence of Deleterious Mutations

Claude Loverdo, James O. Lloyd-Smith

Bioinformatics of Recent Aqua- and Orthoreovirus Isolates from Fish: Evolutionary Gain or Loss of FAST and Fiber Proteins and Taxonomic Implications

Max L. Nibert, Roy Duncan

HIV-1 Clade B pol Evolution following Primary Infection

George K. Hightower, Susanne J. May, [ ... ], Sergei L. Kosakovsky Pond

Evolution of Type 2 Vaccine Derived Poliovirus Lineages. Evidence for Codon-Specific Positive Selection at Three Distinct Locations on Capsid Wall

Tapani Hovi, Carita Savolainen-Kopra, [ ... ], Merja Roivainen

Sequencing of the Hepatitis C Virus: A Systematic Review

Brendan Jacka, Francois Lamoury, [ ... ], Tanya Applegate

An Experimental and Computational Evolution-Based Method to Study a Mode of Co-evolution of Overlapping Open Reading Frames in the AAV2 Viral Genome

Yasuhiro Kawano, Shane Neeley, Kei Adachi, Hiroyuki Nakai

Emergence and Phylodynamics of Citrus tristeza virus in Sicily, Italy

Salvatore Davino, Anouk Willemsen, [ ... ], Luis Rubio

The Evolutionary Rates of HCV Estimated with Subtype 1a and 1b Sequences over the ORF Length and in Different Genomic Regions

Manqiong Yuan, Teng Lu, Chunhua Li, Ling Lu

Molecular Epidemiology and Phylodynamics of the Human Respiratory Syncytial Virus Fusion Protein in Northern Taiwan

Hsin Chi, Hsin-Fu Liu, [ ... ], Li-Min Huang

Model-Selection-Based Approach for Calculating Cellular Multiplicity of Infection during Virus Colonization of Multi-Cellular Hosts

Mark P. Zwart, Nicolas Tromas, Santiago F. Elena

Dengue Virus Type 3 Adaptive Changes during Epidemics in São Jose de Rio Preto, Brazil, 2006–2007

Christian Julian Villabona-Arenas, Adriano Mondini, [ ... ], Maurício L. Nogueira

Acute Phase CD8+ T Lymphocytes against Alternate Reading Frame Epitopes Select for Rapid Viral Escape during SIV Infection

Andrew D. Walsh, Benjamin N. Bimber, [ ... ], Nicholas J. Maness

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