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Transcriptome analysis

RNA-Seq differential expression analysis: An extended review and a software tool

Juliana Costa-Silva, Douglas Domingues, Fabricio Martins Lopes

published 21 Dec 2017

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Comparative transcriptome analyses reveal the genetic basis underlying the immune function of three amphibians’ skin

Wenqiao Fan, Yusong Jiang, Meixia Zhang, Donglin Yang, Zhongzhu Chen, Hanchang Sun, Xuelian Lan, Fan Yan, Jingming Xu, Wanan Yuan

published 21 Dec 2017

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Targeted next-generation sequencing provides novel clues for associated epilepsy and cardiac conduction disorder/SUDEP

Monica Coll, Pasquale Striano, Carles Ferrer-Costa, Oscar Campuzano, Jesús Matés, Bernat del Olmo, Anna Iglesias, Alexandra Pérez-Serra, Irene Mademont, Ferran Picó, Antonio Oliva, Ramon Brugada

published 19 Dec 2017

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Single molecule sequencing of the M13 virus genome without amplification

Luyang Zhao, Liwei Deng, Gailing Li, Huan Jin, Jinsen Cai, Huan Shang, Yan Li, Haomin Wu, Weibin Xu, Lidong Zeng, Renli Zhang, Huan Zhao, Ping Wu, Zhiliang Zhou, Jiao Zheng, Pierre Ezanno, Andrew X. Yang, Qin Yan, Michael W. Deem, Jiankui He

published 18 Dec 2017

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Resistant and susceptible responses in alfalfa (Medicago sativa) to bacterial stem blight caused by Pseudomonas syringae pv. syringae

Lev G. Nemchinov, Jonathan Shao, Maya N. Lee, Olga A. Postnikova, Deborah A. Samac

published 15 Dec 2017

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BRD3/4 inhibition and FLT3-ligand deprivation target pathways that are essential for the survival of human MLL-AF9⁺ leukemic cells

Marco Carretta, Annet Z. Brouwers-Vos, Matthieu Bosman, Sarah J. Horton, Joost H. A. Martens, Edo Vellenga, Jan Jacob Schuringa

published 14 Dec 2017

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Integrating transcriptomics and metabolomics to characterize the regulation of EPA biosynthesis in response to cold stress in seaweed Bangia fuscopurpurea

Min Cao, Dongmei Wang, Yunxiang Mao, Fanna Kong, Guiqi Bi, Qikun Xing, Zhen Weng

published 14 Dec 2017

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Functions for fission yeast splicing factors SpSlu7 and SpPrp18 in alternative splice-site choice and stress-specific regulated splicing

Geetha Melangath, Titash Sen, Rakesh Kumar, Pushpinder Bawa, Subha Srinivasan, Usha Vijayraghavan

published 13 Dec 2017

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Temporal dynamics of gene expression in heat-stressed Caenorhabditis elegans

Katharina Jovic, Mark G. Sterken, Jacopo Grilli, Roel P. J. Bevers, Miriam Rodriguez, Joost A. G. Riksen, Stefano Allesina, Jan E. Kammenga, L. Basten Snoek

published 11 Dec 2017

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Transcriptional profiling of sugarcane leaves and roots under progressive osmotic stress reveals a regulated coordination of gene expression in a spatiotemporal manner

Alejandro Pereira-Santana, Edyciel J. Alvarado-Robledo, Jesus A. Zamora-Briseño, Jorge T. Ayala-Sumuano, Victor M. Gonzalez-Mendoza, Francisco Espadas-Gil, Luis D. Alcaraz, Enrique Castaño, Miguel A. Keb-Llanes, Felipe Sanchez-Teyer, Luis Carlos Rodriguez-Zapata

published 11 Dec 2017

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Genome-wide identification of WRKY genes and their expression profiles under different abiotic stresses in Elaeis guineensis

Yong Xiao, Lixia Zhou, Xintao Lei, Hongxing Cao, Yong Wang, Yajing Dou, Wenqi Tang, Wei Xia

published 11 Dec 2017

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Comparative cell cycle transcriptomics reveals synchronization of developmental transcription factor networks in cancer cells

Johan Boström, Zuzana Sramkova, Alena Salašová, Helena Johard, Diana Mahdessian, Radek Fedr, Carolyn Marks, Jiřina Medalová, Karel Souček, Emma Lundberg, Sten Linnarsson, Vítězslav Bryja, Petra Sekyrova, Mikael Altun, Michael Andäng

published 11 Dec 2017

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RNA-seq reveals transcriptome changes in goats following myostatin gene knockout

Lamei Wang, Bei Cai, Shiwei Zhou, Haijing Zhu, Lei Qu, Xiaolong Wang, Yulin Chen

published 11 Dec 2017

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