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Transcriptome analysis

Cold plasma-induced transcriptomic reprogramming and alternative splicing in tomato plants infected with ToBRFV

Mahsa Rostami, Abozar Ghorbani, Davoud Koolivand, Abolfazl Mazandarani

published 05 Jan 2026

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A non-invasive urinary diagnostic signature for diabetic kidney disease revealed by machine learning and single-cell analysis

Yonggang Chen, Jintai Luo, Yingying Zheng, Xiaomei Jiang, Zixiang Yang, Xiaobing Liu

published 02 Jan 2026

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Evaluation of RNA extraction and rRNA depletion protocols for RNA-Seq in eleven edible seaweed species from brown, red, and green algae

Rob J. Dekker, Wim A. Ensink, Marina F. van Olst, Selina M. van Leeuwen, Wim C. de Leeuw, Martijs J. Jonker, Timo M. Breit

published 02 Jan 2026

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Next-Gen intestinal parasite detection: Leveraging metataxonomics for improved diagnosis of intestinal protists and helminths

Katherine Bedoya-Urrego, Nicolas Rozo-Montoya, Ana L. Galván-Díaz, Gisela M. Garcia-Montoya, Juan F. Alzate

published 02 Jan 2026

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Integrated transcriptome and metabolome analysis of melanin-related genes and metabolites in Muchuan Black Bones Chickens

Liu Wei, Jie Hong-Wei, Gao Ming-Chao, Yao Xiu-Mei, Yin Qiong, Xiang Hai, Ma Zheng, Zhang Zheng-Fen, Li Liang, Li Hua, Qi Hao, Ye Fei

published 30 Dec 2025

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Single-cell RNA-seq data normalization: A benchmarking study

Qinyu Ge, Yuqi Sheng, Junru Lu, Yuwei Yang, Min Pan

published 18 Dec 2025

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Co-regulation of microglial subgroups in Alzheimer’s amyloid pathology: Implications for diagnosis and drug development

Yu Zhou, Yukuan Huang, Yangchang Fan, Feng Xue

published 05 Dec 2025

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Decoding the distinct immune landscape and possible regulatory mechanisms of autoimmune hepatitis through integrated single-cell and bulk RNA sequencing

Gang Chi, Yijia Che, Jinhong Pei, Xueqing Li, Junmei Wang

published 04 Dec 2025

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Targeted fetal NGS panel reveals genetic conditions in sonographically normal fetuses: Insights from a large cohort study

Han-Ying Chen, Yi-Ting Wang, Jessica Kang, Yi-Yun Tai, Ti-Jia Yuan, Shin-Yu Lin, Shi-Ming Lin, Chien-Nan Lee, Tsang-Ming Ko

published 02 Dec 2025

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Early upregulation of immune suppressors dominates the macrophage response to Toxoplasma gondii

Dominykas Murza, Filip Lastovka, George Wood, Matthew P. Brember, Oliver Chan, James W. Ajioka, Betty Y. W. Chung

published 24 Nov 2025

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Single-cell transcriptomics profiling reveals cellular origins and molecular drivers underlying melanoma brain metastasis

Jingxin Zeng, Ling Lin, Yangyang Ma, Wenzhe Huang, Quan Luo, Ju Wen

published 24 Nov 2025

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Multi-omics analysis indicates an association between TAPBP and prostate cancer

Xinlong Wang, Aimin Jiang, Chao Li, Zhiyong Liu

published 21 Nov 2025

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Genome- and transcriptome-wide association meta-analysis reveals new insights into genes affecting coronary and peripheral artery disease

Michael Rode, Maciej Rosolowski, Katrin Horn, Sylvia Henger, Andrej Teren, Kerstin Wirkner, Joachim Thiery, Markus Loeffler, Janne Pott, Holger Kirsten, Markus Scholz

published 18 Nov 2025

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