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Transcriptome analysis

GLM-based optimization of NGS data analysis: A case study of Roche 454, Ion Torrent PGM and Illumina NextSeq sequencing data

Sarah Sandmann, Aniek O. de Graaf, Bert A. van der Reijden, Joop H. Jansen, Martin Dugas

published 21 Feb 2017

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De novo transcriptome analysis and microsatellite marker development for population genetic study of a serious insect pest, Rhopalosiphum padi (L.) (Hemiptera: Aphididae)

Xinle Duan, Kang Wang, Sha Su, Ruizheng Tian, Yuting Li, Maohua Chen

published 17 Feb 2017

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Transcriptome using Illumina sequencing reveals the traits of spermatogenesis and developing testes in Eriocheir sinensis

Gen-Liang Li, Hui Qian

published 17 Feb 2017

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Hepatic transcriptome analysis and identification of differentially expressed genes response to dietary oxidized fish oil in loach Misgurnus anguillicaudatus

Yin Zhang, Yang Li, Xiao Liang, Xiaojuan Cao, Longfei Huang, Jie Yan, Yanxing Wei, Jian Gao

published 17 Feb 2017

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De novo assembly of the sea trout (Salmo trutta m. trutta) skin transcriptome to identify putative genes involved in the immune response and epidermal mucus secretion

Magdalena Malachowicz, Roman Wenne, Artur Burzynski

published 17 Feb 2017

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High-quality RNA extraction from the sea urchin Paracentrotus lividus embryos

Nadia Ruocco, Susan Costantini, Valerio Zupo, Giovanna Romano, Adrianna Ianora, Angelo Fontana, Maria Costantini

published 15 Feb 2017

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A novel hypothesis-unbiased method for Gene Ontology enrichment based on transcriptome data

Mario Fruzangohar, Esmaeil Ebrahimie, David L. Adelson

published 15 Feb 2017

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De novo assembly, characterization and annotation for the transcriptome of Sarcocheilichthys sinensis

Chuankun Zhu, Zhengjun Pan, Hui Wang, Guoliang Chang, Nan Wu, Huaiyu Ding

published 14 Feb 2017

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Transcriptomic, cellular and life-history responses of Daphnia magna chronically exposed to benzotriazoles: Endocrine-disrupting potential and molting effects

Maeva Giraudo, Mélanie Douville, Guillaume Cottin, Magali Houde

published 14 Feb 2017

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Transcriptome analysis of two recombinant inbred lines of common bean contrasting for symbiotic nitrogen fixation

Kelvin Kamfwa, Dongyan Zhao, James D. Kelly, Karen A. Cichy

published 13 Feb 2017

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Transcriptome analysis of hexaploid hulless oat in response to salinity stress

Bin Wu, Yani Hu, Pengjie Huo, Qian Zhang, Xin Chen, Zongwen Zhang

published 13 Feb 2017

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A novel RNA sequencing data analysis method for cell line authentication

Erik Fasterius, Cinzia Raso, Susan Kennedy, Nora Rauch, Pär Lundin, Walter Kolch, Mathias Uhlén, Cristina Al-Khalili Szigyarto

published 13 Feb 2017

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KrillDB: A de novo transcriptome database for the Antarctic krill (Euphausia superba)

Gabriele Sales, Bruce E. Deagle, Enrica Calura, Paolo Martini, Alberto Biscontin, Cristiano De Pittà, So Kawaguchi, Chiara Romualdi, Bettina Meyer, Rodolfo Costa, Simon Jarman

published 10 Feb 2017

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