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Systems science

Optimal In Silico Target Gene Deletion through Nonlinear Programming for Genetic Engineering

Chung-Chien Hong, Mingzhou Song

Statecharts for Gene Network Modeling

Yong-Jun Shin, Mehrdad Nourani

Towards a Rigorous Assessment of Systems Biology Models: The DREAM3 Challenges

Robert J. Prill, Daniel Marbach, [ ... ], Gustavo Stolovitzky

Agent-Based Modeling of Endotoxin-Induced Acute Inflammatory Response in Human Blood Leukocytes

Xu Dong, Panagiota T. Foteinou, [ ... ], Ioannis P. Androulakis

Gene Expression Prediction by Soft Integration and the Elastic Net—Best Performance of the DREAM3 Gene Expression Challenge

Mika Gustafsson, Michael Hörnquist

A Top-Performing Algorithm for the DREAM3 Gene Expression Prediction Challenge

Jianhua Ruan

Timing Robustness in the Budding and Fission Yeast Cell Cycles

Karan Mangla, David L. Dill, Mark A. Horowitz

Viability and Resilience of Languages in Competition

Laetitia Chapel, Xavier Castelló, [ ... ], Maxi San Miguel

An Iterative Approach for Generating Statistically Realistic Populations of Households

Floriana Gargiulo, Sônia Ternes, Sylvie Huet, Guillaume Deffuant

Multiple Imputations Applied to the DREAM3 Phosphoproteomics Challenge: A Winning Strategy

Nicolas Guex, Eugenia Migliavacca, Ioannis Xenarios

Development of a Three Dimensional Multiscale Computational Model of the Human Epidermis

Salem Adra, Tao Sun, [ ... ], Rod Smallwood

Antagonistic Parent-Offspring Co-Adaptation

Mathias Kölliker, Benjamin J. Ridenhour, Sabrina Gaba

Exploring Hypotheses of the Actions of TGF-β1 in Epidermal Wound Healing Using a 3D Computational Multiscale Model of the Human Epidermis

Tao Sun, Salem Adra, [ ... ], Sheila MacNeil

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