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Structural genomics

BRIDES: A New Fast Algorithm and Software for Characterizing Evolving Similarity Networks Using Breakthroughs, Roadblocks, Impasses, Detours, Equals and Shortcuts

Etienne Lord, Margaux Le Cam, Éric Bapteste, Raphaël Méheust, Vladimir Makarenkov, François-Joseph Lapointe

published 31 Aug 2016

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DockQ: A Quality Measure for Protein-Protein Docking Models

Sankar Basu, Björn Wallner

published 25 Aug 2016

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Whole-Genome Sequencing Analysis of Serially Isolated Multi-Drug and Extensively Drug Resistant Mycobacterium tuberculosis from Thai Patients

Kiatichai Faksri, Jun Hao Tan, Areeya Disratthakit, Eryu Xia, Therdsak Prammananan, Prapat Suriyaphol, Chiea Chuen Khor, Yik-Ying Teo, Rick Twee-Hee Ong, Angkana Chaiprasert

published 12 Aug 2016

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The Genomic Scrapheap Challenge; Extracting Relevant Data from Unmapped Whole Genome Sequencing Reads, Including Strain Specific Genomic Segments, in Rats

Robin H. van der Weide, Marieke Simonis, Roel Hermsen, Pim Toonen, Edwin Cuppen, Joep de Ligt

published 08 Aug 2016

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Genome-Wide Prediction and Analysis of 3D-Domain Swapped Proteins in the Human Genome from Sequence Information

Atul Kumar Upadhyay, Ramanathan Sowdhamini

published 28 Jul 2016

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A Cytolethal Distending Toxin Variant from Aggregatibacter actinomycetemcomitans with an Aberrant CdtB That Lacks the Conserved Catalytic Histidine 160

Davor Obradović, Rok Gašperšič, Simon Caserman, Adrijana Leonardi, Maja Jamnik, Zdravko Podlesek, Katja Seme, Gregor Anderluh, Igor Križaj, Peter Maček, Matej Butala

published 14 Jul 2016

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GNG Motifs Can Replace a GGG Stretch during G-Quadruplex Formation in a Context Dependent Manner

Kohal Das, Mrinal Srivastava, Sathees C. Raghavan

published 14 Jul 2016

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LHP1 Regulates H3K27me3 Spreading and Shapes the Three-Dimensional Conformation of the Arabidopsis Genome

Alaguraj Veluchamy, Teddy Jégu, Federico Ariel, David Latrasse, Kiruthiga Gayathri Mariappan, Soon-Kap Kim, Martin Crespi, Heribert Hirt, Catherine Bergounioux, Cécile Raynaud, Moussa Benhamed

published 13 Jul 2016

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Genome-Assisted Prediction of Quantitative Traits Using the R Package sommer

Giovanny Covarrubias-Pazaran

published 06 Jun 2016

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A Carbapenem-Resistant Pseudomonas aeruginosa Isolate Harboring Two Copies of bla_IMP-34 Encoding a Metallo-β-Lactamase

Tatsuya Tada, Tohru Miyoshi-Akiyama, Kayo Shimada, Akino Shiroma, Kazuma Nakano, Kuniko Teruya, Kazuhito Satou, Takashi Hirano, Masahiro Shimojima, Teruo Kirikae

published 07 Apr 2016

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Genomic Footprints in Selected and Unselected Beef Cattle Breeds in Korea

Dajeong Lim, Eva M. Strucken, Bong Hwan Choi, Han Ha Chai, Yong Min Cho, Gul Won Jang, Tae-Hun Kim, Cedric Gondro, Seung Hwan Lee

published 29 Mar 2016

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ENTPRISE: An Algorithm for Predicting Human Disease-Associated Amino Acid Substitutions from Sequence Entropy and Predicted Protein Structures

Hongyi Zhou, Mu Gao, Jeffrey Skolnick

published 16 Mar 2016

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G-Quadruplexes Involving Both Strands of Genomic DNA Are Highly Abundant and Colocalize with Functional Sites in the Human Genome

Andrzej S Kudlicki

published 04 Jan 2016

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