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Structural genomics

Generalising better: Applying deep learning to integrate deleteriousness prediction scores for whole-exome SNV studies

Ilia Korvigo, Andrey Afanasyev, Nikolay Romashchenko, Mikhail Skoblov

published 14 Mar 2018

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Sequence-based multiscale modeling for high-throughput chromosome conformation capture (Hi-C) data analysis

Kelin Xia

published 06 Feb 2018

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Isolation and characterization of a N4-like lytic bacteriophage infecting Vibrio splendidus, a pathogen of fish and bivalves

Pantelis Katharios, Panos G. Kalatzis, Constantina Kokkari, Elena Sarropoulou, Mathias Middelboe

published 28 Dec 2017

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Genomics clarifies taxonomic boundaries in a difficult species complex

Jason Baumsteiger, Peter B. Moyle, Andres Aguilar, Sean M. O’Rourke, Michael R. Miller

published 12 Dec 2017

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PFI1785w: A highly conserved protein associated with pregnancy associated malaria

Claire Kamaliddin, Virginie Salnot, Marjorie Leduc, Sem Ezinmegnon, Cédric Broussard, Nadine Fievet, Philippe Deloron, François Guillonneau, Gwladys I. Bertin

published 09 Nov 2017

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Genome-scale investigation of olfactory system spatial heterogeneity

Torben Noto, Derrick Barnagian, Jason B. Castro

published 24 May 2017

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GOTHiC, a probabilistic model to resolve complex biases and to identify real interactions in Hi-C data

Borbala Mifsud, Inigo Martincorena, Elodie Darbo, Robert Sugar, Stefan Schoenfelder, Peter Fraser, Nicholas M. Luscombe

published 05 Apr 2017

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Impact of genetic variation on three dimensional structure and function of proteins

Roshni Bhattacharya, Peter W. Rose, Stephen K. Burley, Andreas Prlić

published 15 Mar 2017

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An Algorithm for Finding the Singleton Attractors and Pre-Images in Strong-Inhibition Boolean Networks

Zhiwei He, Meng Zhan, Shuai Liu, Zebo Fang, Chenggui Yao

published 18 Nov 2016

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BRIDES: A New Fast Algorithm and Software for Characterizing Evolving Similarity Networks Using Breakthroughs, Roadblocks, Impasses, Detours, Equals and Shortcuts

Etienne Lord, Margaux Le Cam, Éric Bapteste, Raphaël Méheust, Vladimir Makarenkov, François-Joseph Lapointe

published 31 Aug 2016

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DockQ: A Quality Measure for Protein-Protein Docking Models

Sankar Basu, Björn Wallner

published 25 Aug 2016

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Whole-Genome Sequencing Analysis of Serially Isolated Multi-Drug and Extensively Drug Resistant Mycobacterium tuberculosis from Thai Patients

Kiatichai Faksri, Jun Hao Tan, Areeya Disratthakit, Eryu Xia, Therdsak Prammananan, Prapat Suriyaphol, Chiea Chuen Khor, Yik-Ying Teo, Rick Twee-Hee Ong, Angkana Chaiprasert

published 12 Aug 2016

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The Genomic Scrapheap Challenge; Extracting Relevant Data from Unmapped Whole Genome Sequencing Reads, Including Strain Specific Genomic Segments, in Rats

Robin H. van der Weide, Marieke Simonis, Roel Hermsen, Pim Toonen, Edwin Cuppen, Joep de Ligt

published 08 Aug 2016

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